DReichLab/AdmixTools

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Tools test whether admixture occurred and more

Stars: 235
Forks: 76
Open beginner issues: 0
Indexed issues: 62

Dominant language: C
License: No license data
Last GitHub push: Jul 13, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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62 open issues indexed

Questions regarding D-statistic calculation with qpDstat in ADMIXTURE Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

DReichLab/AdmixTools#125 · 7 comments · Opened May 14, 2026
questions about qpDstat Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#123 · 2 comments · Opened Nov 18, 2025
Question about extremely high Z-scores (Z = 100) in qpDstat results Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

DReichLab/AdmixTools#122 · 2 comments · Opened Nov 5, 2025
Question about “duplicate in list” error and memory usage when running qpDstat Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#121 · 1 comment · Opened Nov 4, 2025
F2 utility in admixtools? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#117 · 3 comments · Opened Jul 26, 2025
arithmetic overflow for latest AADR on systems with 32 bit long Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DReichLab/AdmixTools#113 · 5 comments · Opened Apr 9, 2025
Possible bug in mergeit Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#111 · Opened Jan 27, 2025
error: install macOS （15.2 M4） Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

DReichLab/AdmixTools#110 · 1 comment · Opened Jan 16, 2025
High standard errors in qpDstat results Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#105 · 2 comments · Opened Jul 15, 2024
Using f3 to test gene flow from ghost species Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

DReichLab/AdmixTools#103 · 3 comments · Opened Feb 9, 2024
Convertf error "fatalx: no valid samples!" Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

DReichLab/AdmixTools#102 · 1 comment · Opened Jan 4, 2024
Warning while using mergeit Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

DReichLab/AdmixTools#100 · 2 comments · Opened Feb 17, 2023
only 71 lines and truncated Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#98 · Opened Oct 29, 2022
qpAdm - "pop: ??? has sample size 1 and inbreed set" error message Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#96 · 2 comments · Opened Jul 29, 2022
something about qpGraph Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

DReichLab/AdmixTools#95 · Opened Jul 28, 2022
What‘s mean the "best" in the result from the qpDstat? Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

DReichLab/AdmixTools#94 · Opened Jul 21, 2022
qpDstat Segmentation fault (core dumped) Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#93 · Opened Jun 27, 2022
qpWave - Segmentation fault (core dumped) Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#92 · 9 comments · Opened Jun 21, 2022
Compilation issues on macOS Monterey and Sequoia (M1 Mac) Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

DReichLab/AdmixTools#90 · 3 comments · 4 reactions · Opened Apr 22, 2022
warning: bad chrom Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

DReichLab/AdmixTools#89 · 2 comments · Opened Mar 8, 2022
qpF4Ration Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

DReichLab/AdmixTools#88 · Opened Jan 5, 2022
Issue with directories with spaces during install Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

DReichLab/AdmixTools#87 · Opened Nov 20, 2021
zsh: segmentation fault (core dumped) Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

DReichLab/AdmixTools#85 · 1 comment · Opened Nov 7, 2021
ERROR: insufficient number of blocks -- you need 5 blocks with non zero ABBA/BABA program terminating. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#82 · 2 comments · Opened Aug 22, 2021
some questions about result of D-statistics(qpDstat) Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

DReichLab/AdmixTools#81 · 1 comment · Opened Jun 28, 2021
qpDstat not producing any D-statistics result Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#77 · Opened Apr 20, 2021
Potentially a serious issue with Eigenstrat to Plink conversions Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DReichLab/AdmixTools#76 · 2 comments · Opened Apr 1, 2021
Different results of outgroup f3 with different versions of qp3Pop Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

DReichLab/AdmixTools#75 · Opened Mar 25, 2021
Best practices for converting plink bed bim fam to geno snp ind Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

DReichLab/AdmixTools#74 · 3 comments · Opened Mar 6, 2021
AdmixTools For Windows Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

DReichLab/AdmixTools#72 · 1 comment · 1 reaction · Opened Dec 29, 2020
Geno to VCF conversion Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

DReichLab/AdmixTools#67 · 3 comments · Opened Jun 22, 2020
multiple deffinition of wynn Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

DReichLab/AdmixTools#66 · Opened May 31, 2020
Install issue Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

DReichLab/AdmixTools#62 · 2 comments · Opened Apr 17, 2020
fatalx: No samples: Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

DReichLab/AdmixTools#61 · 1 comment · Opened Mar 15, 2020
fatalx: (ineigenstrat) too many lines in file Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#60 · 2 comments · Opened Mar 14, 2020
qpDstats produced strange results for some combination of species Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#59 · 5 comments · Opened Dec 12, 2019
All D-stat values are zero Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#57 · 6 comments · Opened Oct 10, 2019
all individuals set ignore. Likely input problem (col 6) Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

DReichLab/AdmixTools#56 · 1 comment · Opened Oct 5, 2019
output explanation Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

DReichLab/AdmixTools#55 · 1 comment · Opened Aug 30, 2019
bad chrom Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DReichLab/AdmixTools#54 · 19 comments · Opened Aug 23, 2019
qpGraph showing worst f statistic with repeated populations Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

DReichLab/AdmixTools#53 · 1 comment · Opened Jul 25, 2019
Some issue about the software Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#52 · 2 comments · Opened Jun 19, 2019
qpAdm: Option missing from documentation Open

Difficulty 1/5 Under an hour Newbie friendliness 45/100

DReichLab/AdmixTools#49 · 1 comment · Opened Mar 11, 2019
Segmentation fault - qp3pop and qpF4ratio Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#47 · 1 comment · Opened Nov 29, 2018
f2 from qpgraph with NULL as outgroup Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

DReichLab/AdmixTools#44 · 1 comment · Opened Oct 24, 2018
qpAdm p-values Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

DReichLab/AdmixTools#39 · Opened Jun 18, 2018
Issue with qpDstat Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#37 · 3 comments · Opened Apr 18, 2018
How to performe D-stats without chromosome information? Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

DReichLab/AdmixTools#36 · 2 comments · Opened Nov 24, 2017
The results from F4-ratio and D-statistic are different Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

DReichLab/AdmixTools#35 · 1 comment · Opened Nov 16, 2017
D-statistics (qpDstat) Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DReichLab/AdmixTools#34 · 2 comments · Opened Nov 8, 2017

DReichLab/AdmixTools

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