DReichLab / DReichLab/AdmixTools
some questions about result of D-statistics(qpDstat)
Nobody has claimed this yet.
- Dominant language
- C
- Stars
- 235
- Forks
- 76
- PR merge metrics
- No merged PRs in 30d
Description
Hi !!!
from README.Dstatistics,I read these:
D = num/ den
well, It's not the same as "ABBA-BABA" that I often see
and
If the Z-score is +ve, then the gene flow occured either between W and Y or X and Z
If the Z-score is -ve, then the gene flow occured either between W and Z or X and Y.
what does "+ve" or "-ve" mean? Do these mean >0 or <0 ?
And How do I determine between which two groups the gene flow occurs.
I learned that W, X, Y, Z to satisfy such a relationship: (((W, X), Y), Z), to determine, when D / Z-score greater than 0, and gene flow occurred in the W Between Y, less than 0 occurs between X and Y.
Or I can set Z to be an obvious outgroup, then the phylogenetic relationship above does not need to be satisfied, and I can also determine whether the gene flow occurs between W and Y (D>0) or between X and Y (D <0)
At last,It's about visualization. A fixed WXYZ combination has only one value(D/Z-score), so it cannot draw the D statistical results shown in box plots that I often see.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with README.Dstatistics and the qpDstat usage and output documentation. Resolve the questions about D and Z-score signs, group interpretation, and visualization by checking the documented statistical definitions and existing examples. Done means the README clearly explains these points and distinguishes what one fixed WXYZ combination can show.
Written by the indexing model from the issue text.
Assessment
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100