DReichLab / DReichLab/AdmixTools
F2 utility in admixtools?
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- Dominant language
- C
- Stars
- 235
- Forks
- 76
- PR merge metrics
- No merged PRs in 30d
Description
I have been trying to get admixtools utilities to yield a bias-corrected f2 by feeding f3(b;a,a) or f4(b,a;b,a), but these utilities complain and will not produce meaningful output for those instances. How do I get f2(a,b) from ADMIXtools?
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the ADMIXTOOLS utilities involved in f3(b;a,a) and f4(b,a;b,a), along with their documentation, to determine whether either expression is intended to yield a bias-corrected f2(a,b). Confirm the expected behavior and error conditions before defining what support or documentation would constitute completion.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- c
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100