DReichLab / DReichLab/AdmixTools
Possible bug in mergeit
Nobody has claimed this yet.
- Dominant language
- C
- Stars
- 235
- Forks
- 76
- PR merge metrics
- No merged PRs in 30d
Description
There might be be a bug in the the newest version of mergeit. I always gives an error of a duplicated individuals between the two dataset (even if I am sure there are none and it works with an older version of the tool) and also the turn off duplicate parameter doesn't work.
Thanks!
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the report with the newest and older versions of mergeit using two datasets, including the duplicate-check parameter. Trace the mergeit entry point and compare the duplicate detection behavior; done means valid datasets no longer produce a false duplicate error and disabling duplicate checks works.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- c
- Domain
- bioinformatics, cli
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100