DReichLab / DReichLab/AdmixTools

Install issue

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Dominant language
C
Stars
235
Forks
76
PR merge metrics
No merged PRs in 30d

Description

Hi,
I'm not sure if this is the right place to do this, as I'm not very familiar with GitHub.
I have an issue trying to install Admixtools on my Ubuntu machine.
I'm basically following the tutorial from the README.INSTAL file.
After I do "make all" I get 2 errors (probably) meaning libraries "gsl" and "openblas" can't be found:

"
gcc -L./nicksrc qp3Pop.o nicksrc/libnick.a qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o -lgsl -lopenblas -lm -lnick -o qp3Pop
/usr/bin/ld: cannot find -lgsl
/usr/bin/ld: cannot find -lopenblas
collect2: error: ld returned 1 exit status
: recipe for target 'qp3Pop' failed
make: *** [qp3Pop] Error 1
"
I have no clue how to solve this.
Please help.

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with README.INSTAL and reproduce make all on Ubuntu using the reported linker output. Investigate how the build expects the GSL and OpenBLAS libraries to be available; done means the qp3Pop target links successfully without the reported cannot find errors.

Written by the indexing model from the issue text.

Assessment

Tech stack
c
Domain
build-system
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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