DReichLab / DReichLab/AdmixTools
qpAdm - "pop: ??? has sample size 1 and inbreed set" error message
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- Dominant language
- C
- Stars
- 235
- Forks
- 76
- PR merge metrics
- No merged PRs in 30d
Description
Hello,
I have some problem with qpAdm problem, so I need your help.
Please read this and answer me.
I got this error message after trying to running qpAdm
this says that "pop: Fun23 has sample size 1 and inbreed set / Aborted (core dumped)"
maybe this means that there is a problem that some groups has only one individual,
but I think that we can run qpAdm although there are small amount of data.
This error message only comes when I set the parameter "allsnps: Yes"
(if I set the parameter "allsnps: No", then the program runs smoothly with no problem)
What's the matter with my file?
I need your help.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the qpAdm run described in the issue, using the same input with allsnp set to Yes and No. Trace how qpAdm handles the “sample size 1 and inbreed set” condition and determine whether the error reflects invalid input, an allsnp-specific bug, or missing guidance; document the confirmed behavior and resolution.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- c
- Domain
- cli
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100