DReichLab / DReichLab/AdmixTools
How to performe D-stats without chromosome information?
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- Dominant language
- C
- Stars
- 235
- Forks
- 76
- PR merge metrics
- No merged PRs in 30d
Description
I have a "de novo" assembly, and when trying to use qpDstats the columns of chromosome information in the snp file is necesary to run the program. I tried to complete the columned with NA and it is not possible. How can I solve this? If completing the chromosome number randomly the results can chage. I am not sure how to proceed.
Thanks
Agostina
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Research direction
Issue #36 describes qpDstats failing when chromosome information is absent from a de novo assembly SNP file. Start by checking qpDstats input requirements and how chromosome values are used; done would be a documented, validated procedure for handling assemblies without chromosome information.
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Assessment
- Tech stack
- c
- Domain
- bioinformatics
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100