DReichLab / DReichLab/AdmixTools
fatalx: No samples:
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- Dominant language
- C
- Stars
- 235
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Description
THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
genotypename: Rsa.geno
snpname: Rsa.snp.chr_change
indivname: Rsa.ind
popfilename: popfilers
f4mode: YES
qpDstat version: 900
Rsa.snp.chr_change: genetic distance set from physical distance
number of quadruples 120
fatalx:
No samples: Bra
#################################
part of my popfile
Bra RS01 RS02 RS03
Bra RS01 RS02 RS04
Bra RS01 RS02 RS05
Bra RS01 RS02 RS06
Bra RS01 RS02 RS07
Bra RS01 RS02 RS08
Bra RS01 RS02 RS09
Bra RS01 RS02 RS10
Bra RS01 RS03 RS04
Bra RS01 RS03 RS05
Bra RS01 RS03 RS06
Bra RS01 RS03 RS07
Bra RS01 RS03 RS08
#################################
part of my popfile
my indiv file:
Bra U POP1
RS01 U POP2
RS02 U POP3
RS03 U POP4
RS04 U POP5
RS05 U POP6
RS06 U POP7
RS07 U POP8
RS08 U POP9
RS09 U POP10
RS10 U POP11
Thanks!
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the qpDstat entry point and reproduce the reported fatalx output using Rsa.geno, Rsa.snp.chr_change, Rsa.ind, and popfilers. Trace how the population file and indiv file are read, then verify the behavior with the supplied Bra and RS01–RS10 rows; done means the reported mismatch is fixed or clearly diagnosed.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- c
- Domain
- cli
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100