DReichLab / DReichLab/AdmixTools
something about qpGraph
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- Dominant language
- C
- Stars
- 235
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Description
i am confused about this command
qpGraph -p parfile -g graph [-o outgraph] [-d dotfile]
i want to know how i can do with -g graph . it semms to need a tree structure, but how to write the note.
From read the expamle , i see above , but i have no idea to write my own messages , the lable and edge ....
root R
label Out O
label lables populations (leaf nodes) here population is "Out" vertex is "O"
label A A
label B B
label C C
label X X
edge q R Q
edge name q R -> O
edge o R O
edge cc Q CC
edge ab Q AB
edge c CC C
##edge ca CC CA
edge a AB A
edge bb AB BB
edge b BB B
##edge ba BB BA
admix XX BB CC 70 30
XX is admixture node BB , CC ..> XX with mixing proportions .7 .3
qpGraph normalizes weights to sum to 1
edge x XX X
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Research direction
Start with the qpGraph command usage and the graph example shown in this issue. Explain how -g graph expects root, label, edge, and admix lines, including a minimal user-authored graph and the meaning of each field. Done means a newcomer can write a graph file and pass it to -g.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- c
- Domain
- cli
- Issue type
- Documentation
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100