DReichLab / DReichLab/AdmixTools
Issue with qpDstat
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- Dominant language
- C
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- 235
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Description
Hi All,
I have problem running qpDstat.
I am using this ((/home/apps/AdmixTools-master/bin/qpDstat -p parfile.par [-l lo] [-h hi] > GenomeD2)) in my terminal and after a while the run terminates. I cannot see any error except the word (killed).
I have done it for several times but still get the same word and the output file showing only the parameters I have used which you can see below:
/home/apps/AdmixTools-master/bin/qpDstat: parameter file: parfile.par
THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
genotypename: /home/foo/ABBA-BABA/GenomeD.ped.eigenstratgeno
snpname: /home/foo/ABBA-BABA/GenomeD.ped.snp
indivname: /home/foo/ABBA-BABA/GenomeD.ped.ind
poplistname: /home/foo/ABBA-BABA/pop_list
qpDstat version: 711
Any kind of help will be appreciated,
Thanks,
Ahmed
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the qpDstat command, parfile.par, and the input paths shown in the report. Reproduce the run while capturing the full terminal output and determine why the process is terminated with “killed”; done means identifying the cause or documenting the required diagnostic information.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- c
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100