Owner
blekhmanlab
9 indexed repositories · View on GitHub
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host_gene_microbiome_interactions
Analysis framework for integrating gut microbiome and host gene expression data
R · 36 stars
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biomehorizon
Plot microbiome time series in parallel
R · 27 stars
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MicroBioMap
R package for fetching and parsing data of the Human Microbiome Compendium
R · 17 stars
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hominid
Hominid: host-microbiome interaction identification
Python · 16 stars
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compendium
Metadata ingest service
Python · 9 stars
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compendium_website
Website for the Human Microbiome Compendium
TypeScript · 2 stars
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snakemake-template
Quickstart for building out a new snakemake pipeline
Python · 0 stars
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docker_dada2
Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.
Dockerfile · 0 stars
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snakemake-compendium
Human Microbiome Compendium processing pipeline
R · 0 stars
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blekhmanlab/host_gene_microbiome_interactions#1 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/host_gene_microbiome_interactions#2 · 0 comments · 0 reactions · 0 assignees ·
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error in lasso.proj Open
blekhmanlab/host_gene_microbiome_interactions#3 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/biomehorizon#10 · 1 comment · 0 reactions · 0 assignees ·
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Hi Abbie, Open
blekhmanlab/biomehorizon#11 · 2 comments · 0 reactions · 0 assignees ·
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blekhmanlab/biomehorizon#12 · 1 comment · 0 reactions · 0 assignees ·
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blekhmanlab/biomehorizon#13 · 5 comments · 0 reactions · 0 assignees ·
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blekhmanlab/biomehorizon#17 · 1 comment · 0 reactions · 0 assignees ·
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blekhmanlab/snakemake-template#1 · 0 comments · 0 reactions · 1 assignee ·
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blekhmanlab/hominid#1 · 1 comment · 0 reactions · 0 assignees ·
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blekhmanlab/hominid#2 · 31 comments · 0 reactions · 0 assignees ·
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blekhmanlab/hominid#7 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/docker_dada2#1 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/docker_dada2#2 · 0 comments · 0 reactions · 1 assignee ·
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Convert to CLI tool Open
blekhmanlab/compendium#1 · 1 comment · 0 reactions · 0 assignees ·
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Add testing Open
blekhmanlab/compendium#4 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/compendium#5 · 4 comments · 0 reactions · 0 assignees ·
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Restructure project Open
blekhmanlab/compendium#8 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/compendium#9 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/compendium#10 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/compendium#11 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/compendium#12 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/compendium#13 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/compendium#14 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
blekhmanlab/compendium#18 · 0 comments · 0 reactions · 1 assignee ·
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bug
blekhmanlab/compendium#20 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
blekhmanlab/compendium#21 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/snakemake-compendium#4 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/snakemake-compendium#6 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/snakemake-compendium#7 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/snakemake-compendium#8 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/snakemake-compendium#9 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/snakemake-compendium#10 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/snakemake-compendium#11 · 0 comments · 0 reactions · 1 assignee ·
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blekhmanlab/MicroBioMap#6 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/MicroBioMap#7 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/MicroBioMap#9 · 1 comment · 0 reactions · 1 assignee ·
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blekhmanlab/MicroBioMap#10 · 0 comments · 0 reactions · 1 assignee ·
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blekhmanlab/MicroBioMap#12 · 1 comment · 0 reactions · 0 assignees ·
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blekhmanlab/MicroBioMap#13 · 1 comment · 0 reactions · 0 assignees ·
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blekhmanlab/MicroBioMap#14 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/MicroBioMap#16 · 6 comments · 1 reaction · 0 assignees ·
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blekhmanlab/MicroBioMap#22 · 2 comments · 0 reactions · 1 assignee ·
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blekhmanlab/MicroBioMap#23 · 0 comments · 0 reactions · 1 assignee ·
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blekhmanlab/MicroBioMap#24 · 0 comments · 0 reactions · 1 assignee ·
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documentation
blekhmanlab/MicroBioMap#28 · 0 comments · 0 reactions · 0 assignees ·
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blekhmanlab/MicroBioMap#25 · 0 comments · 0 reactions · 1 assignee ·
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documentation
blekhmanlab/MicroBioMap#26 · 1 comment · 0 reactions · 0 assignees ·
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documentation
blekhmanlab/MicroBioMap#27 · 0 comments · 0 reactions · 1 assignee ·
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documentation
blekhmanlab/MicroBioMap#29 · 0 comments · 0 reactions · 0 assignees ·