blekhmanlab / blekhmanlab/compendium
Accession list parsing does not accommodate EOF newline char
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bug
- Dominant language
- Python
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Description
When the `SraAccList.txt` file ends with a newline character, the way the file is parsed causes snakemake to think there's another sample with the name `""`
```
Building DAG of jobs...
MissingInputException in rule filter in file /scratch/midway3/rabdill/compendium/PRJEB55648/workflow/Snakefile, line 41:
Missing input files for rule filter:
[...]
affected files:
fastq/.fastq
```
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