blekhmanlab / blekhmanlab/hominid

Hominid script ends with error

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Dominant language
Python
Stars
16
Forks
4
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Description

Hi,
I have used Hominid where it was working well. However, recently it is throwing an error in a new file.
The error seems to be something like:
ValueError: Input contains NaN, infinity or a value too large for dtype('float64')
and
TypeError: 'NoneType' object is not iterable

After throwing the error, scripts stops execution. Prior to this faulty SNP (where script halts), all other SNPs were processed and written in output file as well.

Please help me where I could be wrong.

I am attaching the scrrenshots of the script as well as error message.

Thanks,

Ankit

![Screenshot from 2019-11-14 10:18:10](https://user-images.githubusercontent.com/8553701/68827396-d4ff9680-06c7-11ea-816b-7b38b75e980e.png)
![Screenshot from 2019-11-14 10:19:41](https://user-images.githubusercontent.com/8553701/68827397-d4ff9680-06c7-11ea-9363-132ce1d512f6.png)

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Research direction

The issue names no source file, test, command, or reproducible input; it only provides screenshots and error excerpts. Start by reproducing the failure on the new file and capture the full traceback at the SNP where processing stops. Done means the failing input and cause of the NaN/infinity and subsequent NoneType errors are identified, with processing behavior verified afterward.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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