blekhmanlab / blekhmanlab/hominid
Hominid script ends with error
- Dominant language
- Python
- Stars
- 16
- Forks
- 4
- PR merge metrics
- No merged PRs in 30d
Description
Hi,
I have used Hominid where it was working well. However, recently it is throwing an error in a new file.
The error seems to be something like:
ValueError: Input contains NaN, infinity or a value too large for dtype('float64')
and
TypeError: 'NoneType' object is not iterable
After throwing the error, scripts stops execution. Prior to this faulty SNP (where script halts), all other SNPs were processed and written in output file as well.
Please help me where I could be wrong.
I am attaching the scrrenshots of the script as well as error message.
Thanks,
Ankit


Contributor guide
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Research direction
The issue names no source file, test, command, or reproducible input; it only provides screenshots and error excerpts. Start by reproducing the failure on the new file and capture the full traceback at the SNP where processing stops. Done means the failing input and cause of the NaN/infinity and subsequent NoneType errors are identified, with processing behavior verified afterward.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100