blekhmanlab / blekhmanlab/compendium

Add ability to restart a failed project as single-end

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Description

In some cases, reverse reads are messed up (or missing) but we don't have a way to explicitly restart a failed project as single-end—it only does that if the pipeline completes. We should add something like a flag to the `again` command to enable this, similarly to https://github.com/blekhmanlab/compendium-manager/issues/12

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