blekhmanlab / blekhmanlab/host_gene_microbiome_interactions
error in lasso.proj
- Dominant language
- R
- Stars
- 36
- Forks
- 16
- PR merge metrics
- No merged PRs in 30d
Description
I met an error when using lasso scripts in my data. Could you probably know what's wrong with my data from the error message?
> > lasso.proj.fit <- lasso.proj(x, y_i, multiplecorr.method = "BH", betainit = beta, sigma = sigma, suppress.grouptesting = F)
> Nodewise regressions will be computed as no argument Z was provided.
> You can store Z to avoid the majority of the computation next time around.
> Z only depends on the design matrix x.
> Error in mapply(score.getZforlambda.unitfunction, i = 1:p, x = list(x = x), :
> 'zero-length inputs cannot be mixed with those of non-zero length'
Contributor guide
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Research direction
Start by reproducing the lasso.proj.fit call with the reported arguments and inspect the dimensions and contents of x, y_i, beta, and sigma before the mapply failure. Compare those inputs with the function's expected shapes and identify the minimal failing data condition; no repository file or test is named.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100