blekhmanlab / blekhmanlab/snakemake-compendium

Troubleshoot DADA2 image in Singularity

Open
#6 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
R
Stars
0
Forks
0
PR merge metrics
No merged PRs in 30d

Description

Including a reference to any version of `docker://blekhmanlab/dada2` as the container for a singularity rule results in an impossibly long processing time for whatever kind of conversion is happening behind the scenes. We need to fix it, or at the very least bite the bullet and let it take however long to build a .sif file for a more recent version, so we can use that in the pipeline. The main suspect is whatever reference files are causing the container image (or at least the .sif version) to blow up to 1.3 GB.

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.