blekhmanlab / blekhmanlab/snakemake-compendium
Fasterq error downloading SRA files
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Description
From project PRJEB35665, which worked except for a few samples:
```
[Thu Jan 12 15:08:44 2023]
rule sra_to_fastq:
input: ERR3711717/ERR3711717.sra
output: fastq/ERR3711717.fastq
jobid: 0
reason: Missing output files: fastq/ERR3711717.fastq
wildcards: sample=ERR3711717
threads: 4
resources: mem_mb=2000, mem_mib=1908, disk_mb=1000, disk_mib=954, tmpdir=/tmp, slurm_account=blekhman, slurm_partition=blekhman, runtime=480
Activating singularity image /scratch.global/rabdill/cmanager/PRJEB35665/.snakemake/singularity/bcbd3b6afc4ba4e91c4bb840b33d8209.simg
2023-01-12T21:08:45 fasterq-dump.3.0.1 err: cmn_iter.c cmn_read_String( #45057 ).VCursorCellDataDirect() -> RC(rcVDB,rcBlob,rcReading,rcBlob,rcCorrupt)
```
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