Error in estimate.sigma.fit.hdi(x, y, gene_list[i]) :

> source("hdi_lasso_proj_loocv_MSI.R")
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
[1] "Number of workers: 20"
[1] "genes.list: /data/longyong/lasso/gene_list.txt"
[1] "genes.table: /data/longyong/lasso/gene_small.txt"
[1] "microbiome.table: /data/longyong/lasso/microbes.txt"
[1] "output.dir: /data/longyong/lasso/output"
[1] "# genes = 6541"
[1] "# microbes = 213"
Read 6541 items
Error in estimate.sigma.fit.hdi(x, y, gene_list[i]) :
task 1 failed - "zero-length inputs cannot be mixed with those of non-zero length"
Timing stopped at: 5.558 1.596 3679

Reproduce the failure by sourcing hdi_lasso_proj_loocv_MSI.R with the listed gene, microbe, and output paths. Inspect the call to estimate.sigma.fit.hdi and the inputs for the first parallel task to identify the zero-length value. Done means the analysis runs past this error with the reported gene and microbiome data.

Written by the indexing model from the issue text.