nf-core/variantbenchmarking
View on GitHubPipeline to evaluate and validate the accuracy of variant calling methods in genomic research
- Stars
- 51
- Forks
- 31
- Open beginner issues
- 0
- Indexed issues
- 29
- Avg merge
- 1d 22h
- Merged PRs (30d)
- 1
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Jul 27, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- good first issue
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hap.py benchmarking silently produces empty results for GRCh37/b37 (non-chr-prefixed) references Open
Difficulty 3/5 1-2 days Newbie friendliness 68/100
nf-core/variantbenchmarking#324 · 1 comment ·
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Difficulty 3/5 1-2 days Newbie friendliness 68/100
nf-core/variantbenchmarking#323 ·
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bug
Difficulty 3/5 1-2 days Newbie friendliness 45/100
nf-core/variantbenchmarking#321 ·
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Add rep.py report Openenhancement
Difficulty 3/5 1-2 days Newbie friendliness 48/100
nf-core/variantbenchmarking#308 ·
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
nf-core/variantbenchmarking#307 · 3 comments ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 48/100
nf-core/variantbenchmarking#306 · 3 comments ·
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low priority
nf-core/variantbenchmarking#293 · 1 assignee ·
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wittyer_benchmark Openlow priority
nf-core/variantbenchmarking#291 · 2 assignees ·
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svanalyser_benchmark Openlow priority
nf-core/variantbenchmarking#285 · 1 assignee ·
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happy_benchmark Openlow priority
nf-core/variantbenchmarking#284 · 1 assignee ·
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enhancement low priority
nf-core/variantbenchmarking#280 · 1 assignee ·
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enhancement good first issue low priority
Difficulty 4/5 3-5 days Newbie friendliness 25/100
nf-core/variantbenchmarking#265 · 2 comments ·
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enhancement low priority
Difficulty 4/5 3-5 days Newbie friendliness 35/100
nf-core/variantbenchmarking#264 · 5 comments ·
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bug enhancement
Difficulty 4/5 3-5 days Newbie friendliness 35/100
nf-core/variantbenchmarking#233 ·
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bug
Difficulty 4/5 3-5 days Newbie friendliness 35/100
nf-core/variantbenchmarking#225 · 10 comments ·
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enhancement not urgent
Difficulty 4/5 3-5 days Newbie friendliness 35/100
nf-core/variantbenchmarking#202 · 3 comments · 1 reaction ·
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enhancement good first issue
nf-core/variantbenchmarking#199 · 1 assignee ·
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bug
Difficulty 3/5 1-2 days Newbie friendliness 25/100
nf-core/variantbenchmarking#187 ·
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bug
Difficulty 4/5 3-5 days Newbie friendliness 25/100
nf-core/variantbenchmarking#186 · 1 comment ·
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igv-reports Openbacklog enhancement low priority
Difficulty 4/5 3-5 days Newbie friendliness 35/100
nf-core/variantbenchmarking#184 ·
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backlog enhancement
Difficulty 3/5 1-2 days Newbie friendliness 45/100
nf-core/variantbenchmarking#183 ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
nf-core/variantbenchmarking#180 ·
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enhancement good first issue
Difficulty 4/5 3-5 days Newbie friendliness 35/100
nf-core/variantbenchmarking#114 ·
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somatic workflow Open
Difficulty 5/5 Over a week Newbie friendliness 15/100
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backlog enhancement not urgent
Difficulty 4/5 3-5 days Newbie friendliness 30/100
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enhancement not urgent
Difficulty 5/5 Over a week Newbie friendliness 20/100
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add oncoliner tools Openenhancement not urgent
nf-core/variantbenchmarking#89 · 1 assignee ·
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backlog enhancement
Difficulty 5/5 Over a week Newbie friendliness 25/100
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backlog enhancement
Difficulty 4/5 3-5 days Newbie friendliness 35/100