nf-core / nf-core/variantbenchmarking
add total stats for happy merging snps and indels
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Nobody has claimed this yet.
backlog
enhancement
- Dominant language
- Nextflow
- Stars
- 51
- Forks
- 31
- Avg merge
- 1d 22h
- Merged PRs (30d)
- 1
Description
Description of feature
- happy reports SNP and INDEL separately, but a total comparison is also needed.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by finding the existing happy reporting path that produces separate SNP and INDEL statistics. Compare its current outputs and define the combined total output; done means the pipeline reports the requested total alongside the separate categories. No file or test is named in the issue, so repository exploration is required.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100