nf-core / nf-core/variantbenchmarking
Port local subworkflows to nf-core/modules
Open
Nobody has claimed this yet.
enhancement
good first issue
low priority
- Dominant language
- Nextflow
- Stars
- 51
- Forks
- 31
- Avg merge
- 1d 22h
- Merged PRs (30d)
- 1
Description
Description of feature
- happy_benchmark
- small_germline_benchmark
- small_somatic_benchmark
- sompy_benchmark
- sv_germline_benchmark
- svanalyser_benchmark
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the six local subworkflows named in the issue: happy_benchmark, small_germline_benchmark, small_somatic_benchmark, sompy_benchmark, sv_germline_benchmark, and svanalyser_benchmark. Read their current definitions and the nf-core/modules conventions first. Done means each listed subworkflow has been ported and the relevant pipeline checks confirm that the benchmark workflows still run.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100