nf-core / nf-core/variantbenchmarking
generate somatic test files for COLO-829
Open
Nobody has claimed this yet.
backlog
enhancement
not urgent
- Dominant language
- Nextflow
- Stars
- 51
- Forks
- 31
- Avg merge
- 1d 22h
- Merged PRs (30d)
- 1
Description
Description of feature
Generate test matching truth files using https://www.nature.com/articles/s41598-019-55636-3
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Read the linked Nature paper for the COLO-829 somatic data, then inspect the repository for existing test and matching-truth file conventions. Define the expected truth files from the paper and confirm that the generated files are usable by the benchmark tests.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, testing-qa
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100