nf-core / nf-core/variantbenchmarking
somatic workflow
Open
A pull request for this has already been merged.
- #276 by @kubranarci — merged
- Dominant language
- Nextflow
- Stars
- 51
- Forks
- 31
- Avg merge
- 1d 22h
- Merged PRs (30d)
- 1
Description
- SNVs and indels
- SVs
- CNVs
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the repository workflow entry points and the merged pull request #276, since the issue lists only somatic variant categories: SNVs and indels, SVs, and CNVs. Determine whether those categories are already covered and what remains for the somatic workflow; done should be defined against the intended benchmark scope.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 15/100