nf-core / nf-core/variantbenchmarking
some of test configs under conf/ are outdated
Open
Nobody has claimed this yet.
bug
- Dominant language
- Nextflow
- Stars
- 51
- Forks
- 31
- Avg merge
- 1d 22h
- Merged PRs (30d)
- 1
Description
Description of the bug
Some of the test profiles are producing errors regarding the latest changed in regions file and high_conf definitions.
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by inspecting the test profiles under conf/ and compare their references with the current regions file and high_conf definitions. Run the affected profiles to identify which configurations produce errors; the work is done when the outdated profiles run without those errors.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, testing-qa
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Active
- Clarity
- Needs clarification
- Newbie friendliness
- 45/100