nf-core / nf-core/variantbenchmarking
add oncoliner tools
Open
@kubranarci is already working on this.
Since Oct 14, 2024.
enhancement
not urgent
- Dominant language
- Nextflow
- Stars
- 51
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- 31
- Avg merge
- 1d 22h
- Merged PRs (30d)
- 1
Description
Description of feature
ONCOLINER project as a part of EUCANCan has main 3 tools for harmonisation, assessment and improvement of somatic variant callers. All the tools can be used one another or standalone. I am thinking about adding harmonization (which is variant-extractor normalize step) and assessment for benchmarking and last step can also be added merging all the input files given. Could be a nice feature.
https://github.com/EUCANCan/oncoliner/blob/main/modules/oncoliner_assessment/example/example_main.sh
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