nf-core / nf-core/variantbenchmarking
Running analysis on sample sample id's
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Description
Would it be possible to run pairwise analysis on same id samples only ?
At present the workflow accepts test1, test2, but, let's say you have same id H021-YAGAH and H021-YAGAH, but output from different callers. would it be possible to run?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing the workflow's pairwise analysis path and how it currently validates sample IDs. Check whether two inputs with the same ID but different caller outputs can be represented without breaking existing comparisons. Done means same-ID samples are accepted and pairwise results remain correct; the issue names no files or tests, so those entry points must be located first.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100