wikipathways/GPML2RDF

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GPML2RDF converter

Stars: 4
Forks: 2
Open beginner issues: 0
Indexed issues: 39

Dominant language: Java
License: Apache-2.0
Last GitHub push: Jul 16, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: help wanted
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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39 open issues indexed

Load FOAF ontology Open

wikipathways/GPML2RDF#123 · 2 comments · 2 assignees · Opened Feb 10, 2026
interaction not recognized Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wikipathways/GPML2RDF#122 · Opened Jan 25, 2026
Include biodirectional interactions in WP RDF Open

enhancement

wikipathways/GPML2RDF#121 · 1 assignee · Opened Jul 24, 2025
Test for errors in `rdf:type` annotations Open

wikipathways/GPML2RDF#120 · 1 comment · 1 assignee · Opened Apr 16, 2025
Not all interaction are created, e.g. not for things annotated with disease (or so it seems) Open

bug enhancement

wikipathways/GPML2RDF#119 · 1 assignee · Opened Dec 27, 2024
add Bioregistry-style compact identifiers Open

enhancement question

wikipathways/GPML2RDF#117 · 2 comments · 1 assignee · Opened Jun 11, 2023
gpml:version ? Open

enhancement

wikipathways/GPML2RDF#115 · 1 assignee · Opened Nov 3, 2022
Check infobox statement in GPML-RDF Open

enhancement

wikipathways/GPML2RDF#113 · 2 comments · 1 assignee · Opened Nov 3, 2022
Use Wikidata subsets for Chemistry + Scholia data Open

enhancement

wikipathways/GPML2RDF#107 · 1 comment · 2 assignees · Opened May 7, 2021
[SPARQL] BeeGee interoperability Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

wikipathways/GPML2RDF#106 · Opened May 6, 2021
Change from rdf:type wp:Pathway to rdfs:subClassOf wp:Pathway Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

wikipathways/GPML2RDF#97 · Opened Nov 30, 2020
support for .well-known/sparql-examples/ Open

SPARQL

Difficulty 4/5 3-5 days Newbie friendliness 30/100

wikipathways/GPML2RDF#96 · Opened Nov 21, 2020
[SPARQL] Rhea's RDF Open

enhancement SPARQL

wikipathways/GPML2RDF#95 · 4 comments · 1 assignee · Opened Nov 21, 2020
Update https://vocabularies.wikipathways.org/ Open

enhancement proposal RDF Interoperability

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wikipathways/GPML2RDF#89 · Opened Sep 18, 2020
resolvable WikiPathways RDF IRIs Open

enhancement proposal RDF Interoperability

wikipathways/GPML2RDF#83 · 8 assignees · Opened Aug 10, 2020
[SPARQL] EMBL-EBI's RDF - ChEMBL Open

enhancement SPARQL

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wikipathways/GPML2RDF#82 · Opened Aug 10, 2020
[SPARQL] UniProt Open

enhancement SPARQL

wikipathways/GPML2RDF#81 · 1 assignee · Opened Aug 10, 2020
[SPARQL] Wikidata Open

enhancement SPARQL

Difficulty 5/5 Over a week Newbie friendliness 25/100

wikipathways/GPML2RDF#80 · 1 comment · Opened Aug 10, 2020
fix returning VoID for this YummyData test Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

wikipathways/GPML2RDF#77 · 1 comment · Opened Aug 6, 2020
Support of Complex identifiers Open

beta

Difficulty 5/5 Over a week Newbie friendliness 20/100

wikipathways/GPML2RDF#75 · 4 comments · Opened May 3, 2020
MIM type for PTMs? Open

question

wikipathways/GPML2RDF#69 · 1 comment · 2 assignees · Opened Jul 29, 2019
identify the shapes for which to develop ShEX Open

enhancement ShEX

wikipathways/GPML2RDF#67 · 7 comments · 1 assignee · Opened Jun 10, 2019
in the RDF the things Protein should also be typed GeneProduct Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wikipathways/GPML2RDF#64 · Opened May 26, 2019
update PV dependencies to support MIM_TRANSLOCATION Open

enhancement

wikipathways/GPML2RDF#61 · 1 assignee · Opened May 20, 2019
stop typing interactions as multiple type, but only the most specific Open

enhancement

wikipathways/GPML2RDF#60 · 1 comment · 1 assignee · Opened Mar 28, 2019
update of interaction types Open

question

wikipathways/GPML2RDF#58 · 3 comments · 3 assignees · Opened Feb 24, 2019
check needs to Linked Data readiness Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

wikipathways/GPML2RDF#55 · Opened Nov 6, 2018
link to Reactome RDF Open

enhancement RDF Interoperability

Difficulty 5/5 Over a week Newbie friendliness 20/100

wikipathways/GPML2RDF#54 · Opened Nov 6, 2018
WP vocabulary Pathway node type? Open

wikipathways/GPML2RDF#53 · 1 comment · 1 assignee · Opened Aug 13, 2018
Add enzymes/genes/proteins from a group to an interaction Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

wikipathways/GPML2RDF#52 · Opened Jul 25, 2018
Links to Wikidata for Genes and Proteins Open

enhancement RDF Interoperability

Difficulty 5/5 Over a week Newbie friendliness 25/100

wikipathways/GPML2RDF#46 · Opened Nov 15, 2017
register WikiPathways RDF on DataHub to LOD cloud inclusion Open

enhancement help wanted

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wikipathways/GPML2RDF#44 · Opened Nov 12, 2017
link set between WPRDF IRI and the Pathway Ontology Open

enhancement help wanted

Difficulty 4/5 3-5 days Newbie friendliness 35/100

wikipathways/GPML2RDF#39 · 1 comment · Opened Apr 2, 2017
consider submitting templates for SPANG Open

enhancement help wanted

Difficulty 5/5 Over a week Newbie friendliness 15/100

wikipathways/GPML2RDF#35 · Opened Feb 14, 2017
date/year information (of last edit) of pathway is missing Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wikipathways/GPML2RDF#34 · 1 comment · Opened Nov 4, 2016
include author information Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 28/100

wikipathways/GPML2RDF#33 · 9 comments · Opened Nov 2, 2016
possible wrong namespace assignment "http://vocabularies.wikipathways.org/gpml#PublicationXref" Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wikipathways/GPML2RDF#31 · Opened Nov 2, 2016
possible wrong namespace assignment http://vocabularies.wikipathways.org/wp#DataNode Open

enhancement question

Difficulty 2/5 1-3 hours Newbie friendliness 42/100

wikipathways/GPML2RDF#30 · 3 comments · Opened Nov 2, 2016
use skos:closeMatch for Reactome pathways Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wikipathways/GPML2RDF#28 · 1 comment · Opened Jul 11, 2016

wikipathways/GPML2RDF

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