wikipathways / wikipathways/GPML2RDF
resolvable WikiPathways RDF IRIs
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@ammar257ammar is already working on this.
Since Aug 10, 2020.
enhancement
proposal
RDF Interoperability
- Dominant language
- Java
- Stars
- 4
- Forks
- 2
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Description
Currently, the WikiPathways RDF resource IRIs are based on identifiers.org. While that is a useful intereoperability feature, it also makes our data not linked data, where doing a HTTP request on the IRI returns you RDF about the resource with that IRI.
Proposal
Resolvable IRIs
- replace IRIs patterns for the following resource types to start with http://rdf.wikipathways.org
- Pathway
- GeneProduct
- Rna
- Protein
- Metabolite
- Complex
- Interaction
This list is taken to reflect things that can have identifiers and (BridgeDb-based) links out.
Implementing the resolving
- Apache/Nginx server that hosts rdf.wikipathways.org needs to recognize the new IRIs
- the IRI returns RDF:
- the RDF is created by running a DESCRIBE against SPARQL endpoint
- the IRI returns HTML:
- for WikiPathways IRIs it would redirect to the wikipathways.org page
- for other items it would show useful info, optional, and can be done later on.
- maybe redirect to Scholia?
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