wikipathways / wikipathways/GPML2RDF
Links to Wikidata for Genes and Proteins
Open
Nobody has claimed this yet.
enhancement
RDF Interoperability
- Dominant language
- Java
- Stars
- 4
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
Link set can leverage from the work of Andrew Su's team and a simple SPARQL allows us to create the proper link set. This can be done during the building of a new BridgeDb gene-gene ID mapping database, or during the building of the WPRDF.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Review Andrew Su's team's work and the proposed SPARQL approach first. Determine whether the Wikidata gene and protein links should be generated while building a BridgeDb gene-gene ID mapping database or during WPRDF construction; done means the selected build path produces the proper link set.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100