wikipathways / wikipathways/GPML2RDF
add Bioregistry-style compact identifiers
@egonw is already working on this.
Since Jun 11, 2023.
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Description
@cthoyt, let's say, I would be adding Bioregistry-style compact identifiers as Literals to the WikiPathways RDF, is there already an ontology with a predicate for such identifiers?
Let's say we have this:
<https://identifiers.org/ensembl/ENSG00000139163>
rdf:type wp:GeneProduct , wp:DataNode ;
rdfs:label "ETNK1" ;
wp:bdbEnsembl <https://identifiers.org/ensembl/ENSG00000139163> ;
wp:bdbEntrezGene <https://identifiers.org/ncbigene/55500> ;
wp:bdbHgncSymbol <https://identifiers.org/hgnc.symbol/ETNK1> ;
wp:bdbUniprot <https://identifiers.org/uniprot/A0A5K1VW28> , <https://identifiers.org/uniprot/Q86U68> , <https://identifiers.org/uniprot/Q9HBU6> , <https://identifiers.org/uniprot/H0YH69> , <https://identifiers.org/uniprot/H0YFP7> , <https://identifiers.org/uniprot/A0A
5F9ZI33> ;
wp:bdbWikidata <http://www.wikidata.org/entity/Q18041828> .
And I would add something like x:y as below, what should x:y be (ps, ignore the prefixes, I didn't check them; you get the point)?
<https://identifiers.org/ensembl/ENSG00000139163>
x:y "ensembl:ENSG00000139163" , ncbigene:55500", "hgnc.symbol:ETNK1", uniprot:A0A5K1VW28", "uniprot:Q9HBU6", "uniprot:H0YH69", "uniprot:H0YFP7", "uniprot/A0A5F9ZI33, "wikidata:Q18041828" ;
I could use wp:bdbBioregistry but maybe you have something better in mind?
(yes, once we're done with full RDF support in Bioregistry we can add that too)
cc @DeniseSl22 @marvinm2 @ammar257ammar
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