wikipathways / wikipathways/GPML2RDF

include author information

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#33 9 comments 0 reactions 0 assignees View on GitHub

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bug
Dominant language
Java
Stars
4
Forks
2
PR merge metrics
No merged PRs in 30d

Description

Which is needed downstream for nanopublications, but actually for any system that uses the citation expectations for WikiPathways outlined at http://www.wikipathways.org/index.php/How_to_cite_WikiPathways

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reading the GPML2RDF conversion entry points and tracing how pathway metadata is represented. The issue provides no file or test location, so first identify where author information can come from and how converted output is validated. Done means the output exposes the author information needed for the cited WikiPathways citation expectations and downstream nanopublications.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
data
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
28/100

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