wikipathways / wikipathways/GPML2RDF
link to Reactome RDF
Open
Nobody has claimed this yet.
enhancement
RDF Interoperability
- Dominant language
- Java
- Stars
- 4
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
There is a nice example in WP3305:
<http://rdf.wikipathways.org/Pathway/WP3305_r103040/WP/Interaction/f9921>
a wp:DirectedInteraction , wp:Interaction ;
dc:source "Reactome"^^xsd:string ;
dcterms:bibliographicCitation <http://identifiers.org/pubmed/10471499> , <http://identifiers.org/pubmed/14610093> ;
dcterms:identifier "R-HSA-427337"^^xsd:string ;
dcterms:isPartOf <http://identifiers.org/wikipathways/WP3305_r103040> ;
wp:isAbout <http://rdf.wikipathways.org/Pathway/WP3305_r103040/Interaction/d463d> , <http://rdf.wikipathways.org/Pathway/WP3305_r103040/Interaction/ebfe6> , <http://rdf.wikipathways.org/Pathway/WP3305_r103040/Interaction/f9921> , <http://rdf.wikipathways.org/Pathway/WP3305_r103040/Interaction/b1d02> ;
wp:participants <http://identifiers.org/reactome/R-HSA-427343> , <http://identifiers.org/uniprot/Q9UBB5> , <http://identifiers.org/reactome/R-HSA-5226877> ;
wp:source <http://identifiers.org/uniprot/Q9UBB5> , <http://identifiers.org/reactome/R-HSA-5226877> ;
wp:target <http://identifiers.org/reactome/R-HSA-427343> .
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the linked WP3305.ttl example and the repository's current Java conversion flow. The issue does not name a file, test, or entry point, so first clarify what “link to Reactome RDF” should change; completion should be judged against an agreed Reactome link in the generated RDF output.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100