wikipathways / wikipathways/GPML2RDF

link to Reactome RDF

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enhancement RDF Interoperability
Dominant language
Java
Stars
4
Forks
2
PR merge metrics
No merged PRs in 30d

Description

There is a nice example in WP3305:

<http://rdf.wikipathways.org/Pathway/WP3305_r103040/WP/Interaction/f9921>
        a                              wp:DirectedInteraction , wp:Interaction ;
        dc:source                      "Reactome"^^xsd:string ;
        dcterms:bibliographicCitation  <http://identifiers.org/pubmed/10471499> , <http://identifiers.org/pubmed/14610093> ;
        dcterms:identifier             "R-HSA-427337"^^xsd:string ;
        dcterms:isPartOf               <http://identifiers.org/wikipathways/WP3305_r103040> ;
        wp:isAbout                     <http://rdf.wikipathways.org/Pathway/WP3305_r103040/Interaction/d463d> , <http://rdf.wikipathways.org/Pathway/WP3305_r103040/Interaction/ebfe6> , <http://rdf.wikipathways.org/Pathway/WP3305_r103040/Interaction/f9921> , <http://rdf.wikipathways.org/Pathway/WP3305_r103040/Interaction/b1d02> ;
        wp:participants                <http://identifiers.org/reactome/R-HSA-427343> , <http://identifiers.org/uniprot/Q9UBB5> , <http://identifiers.org/reactome/R-HSA-5226877> ;
        wp:source                      <http://identifiers.org/uniprot/Q9UBB5> , <http://identifiers.org/reactome/R-HSA-5226877> ;
        wp:target                      <http://identifiers.org/reactome/R-HSA-427343> .

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing the linked WP3305.ttl example and the repository's current Java conversion flow. The issue does not name a file, test, or entry point, so first clarify what “link to Reactome RDF” should change; completion should be judged against an agreed Reactome link in the generated RDF output.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
tooling
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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