wikipathways / wikipathways/GPML2RDF
[SPARQL] EMBL-EBI's RDF - ChEMBL
Open
Nobody has claimed this yet.
enhancement
SPARQL
- Dominant language
- Java
- Stars
- 4
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
Reduce need for rewriting IRIs
- shares IRIs for genes
- shares IRIs for proteins
- shares IRIs for metabolites
- shares IRIs for complexes
- shares IRIs for publications
Write up examples SPARQL query
- write examples for the WikiPathways SPARQL book
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the issue checklist and the linked WikiPathways SPARQL book to understand the expected RDF and query examples. Done means shared IRIs are addressed for genes, proteins, metabolites, complexes, and publications, with example SPARQL queries written for the book.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100