cortex-lab/phy

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phy: interactive visualization and manual spike sorting of large-scale ephys data

Stars: 430
Forks: 187
Open beginner issues: 0
Indexed issues: 77
Avg merge: 2h 31m
Merged PRs (30d): 2

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Aug 21, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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77 issues indexed so far

Phy is running very slow Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1417 · 3 comments · Opened Sep 9, 2026
Blurred PCAs in the FeatureView Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

cortex-lab/phy#1410 · 1 comment · Opened Aug 13, 2026
Error with: QWidget: Must construct a QApplication before a QWidget Open

area: installation status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1362 · 2 comments · Opened Dec 20, 2025
Unsuccessful in installing plugins Open

area: plugins status: needs-info type: question

Difficulty 3/5 1-2 days Newbie friendliness 35/100

cortex-lab/phy#1351 · 1 comment · Opened Sep 16, 2025
CITATION file request Open

area: documentation priority: low type: enhancement

Difficulty 1/5 Under an hour Newbie friendliness 35/100

cortex-lab/phy#1343 · Opened May 22, 2025
Templates and mean waveforms have a different offset Open

area: visualization status: confirmed type: bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

cortex-lab/phy#1332 · Opened Feb 27, 2025
GLError (invalid operation) in phy when running via RDP on Windows Server 2019 Open

area: installation priority: low status: confirmed type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1328 · Opened Feb 8, 2025
Added a peristimulus histogram viewer - make pull request? Open

area: plugins type: enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

cortex-lab/phy#1325 · Opened Jan 10, 2025
Segmentation Fault after Set state for FeatureView. Open

area: installation status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1311 · 2 comments · Opened Oct 18, 2024
ProbeView shows multiple shanks in the case of staggard channel locations. Open

area: visualization priority: low type: enhancement

Difficulty 4/5 3-5 days Newbie friendliness 28/100

cortex-lab/phy#1303 · Opened Aug 19, 2024
after splitting in phy the amp is not recomputed Open

area: data type: bug

Difficulty 3/5 1-2 days Newbie friendliness 32/100

cortex-lab/phy#1293 · 1 comment · Opened Jul 4, 2024
OpenGL error loading datasets that previously opened without issue Open

area: installation priority: low type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1291 · 4 comments · Opened Jul 1, 2024
Regarding the issue of drawing 2D probes. Open

area: visualization type: enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1276 · 4 comments · Opened May 20, 2024
Shank visualization Open

area: visualization priority: low type: enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1262 · 2 comments · Opened Mar 25, 2024
Label mismatch in WaveformView and FeatureView vs. Correlogram View and n_spikes Open

area: data priority: high status: confirmed type: bug

Difficulty 4/5 3-5 days Newbie friendliness 30/100

cortex-lab/phy#1261 · 9 comments · Opened Mar 20, 2024
Issue loading and visualizing previously curated data Open

area: data status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 38/100

cortex-lab/phy#1258 · 2 comments · Opened Mar 8, 2024
Crash in phy with Exception in paintGL Open

area: installation status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 38/100

cortex-lab/phy#1243 · 2 comments · Opened Jan 4, 2024
Missing Amplitudeview Open

area: visualization status: needs-info type: bug

Difficulty 3/5 1-2 days Newbie friendliness 42/100

cortex-lab/phy#1242 · 4 comments · Opened Dec 21, 2023
Programmatically save cluster_info.tsv Open

area: data type: enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

cortex-lab/phy#1241 · 5 comments · 1 reaction · Opened Dec 19, 2023
Waveforms view only show mean waveforms Open

area: visualization status: confirmed type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1238 · 10 comments · Opened Nov 24, 2023
Problem with get_cluster_spike_waveforms Open

area: data type: bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1208 · Opened May 26, 2023
Adjust default zoom for waveforms vs templates in WaveformView? Open

area: visualization type: enhancement

Difficulty 4/5 3-5 days Newbie friendliness 30/100

cortex-lab/phy#1201 · Opened Mar 2, 2023
Problem with OpenGL Drivers [Ubuntu 22.04] Open

area: installation type: bug

Difficulty 4/5 3-5 days Newbie friendliness 20/100

cortex-lab/phy#1196 · 2 comments · Opened Feb 17, 2023
Inconsistent Behavior with using phy with multiple users on same server Open

area: gui status: needs-info type: bug

Difficulty 3/5 1-2 days Newbie friendliness 38/100

cortex-lab/phy#1194 · 1 comment · Opened Feb 8, 2023
Missing files in cache folders when using phy on different computer Open

area: data status: needs-info type: bug

Difficulty 3/5 1-2 days Newbie friendliness 52/100

cortex-lab/phy#1191 · 1 comment · Opened Jan 25, 2023
Best channel does not have the largest amplitude for its waveform template? Open

area: data type: bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1187 · Opened Dec 13, 2022
chn 0 giving me no feature and amplitude value Open

area: data status: confirmed type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1184 · 3 comments · Opened Nov 27, 2022
Clusters in Waveform View Unaligned Open

area: visualization status: confirmed type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1155 · 2 comments · 2 reactions · Opened Apr 21, 2022
In WaveformView, channel locations incorrect Open

area: data status: needs-info type: bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

cortex-lab/phy#1147 · 2 comments · Opened Apr 6, 2022
No state set to SimilarityView and WaveformView when starting gui Open

area: visualization status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 38/100

cortex-lab/phy#1144 · 1 comment · Opened Mar 18, 2022
Peak activity and template appear on different channels Open

area: data type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1137 · Opened Feb 10, 2022
Strange Splitting Open

area: data priority: high status: confirmed type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1133 · 2 comments · Opened Jan 30, 2022
problems with trace view Open

area: visualization status: needs-info type: question

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1130 · 1 comment · Opened Dec 26, 2021
Quickly filter by time in WavevormView, TemplateFeatureView, FeatureView, CorrelogramView Open

area: visualization type: enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

cortex-lab/phy#1127 · Opened Nov 22, 2021
AmplidueView scattered at 0 amplidude Open

area: data type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1125 · Opened Nov 17, 2021
GLError - clusterview OK but waveforms or other views are not displayed Open

area: installation status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1117 · 14 comments · 1 reaction · Opened Sep 30, 2021
XmbText result code -2 Open

area: performance status: needs-info type: bug

Difficulty 3/5 1-2 days Newbie friendliness 48/100

cortex-lab/phy#1108 · 1 comment · Opened Aug 25, 2021
Traceview shows invalid traces for spikes Open

area: data type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1103 · Opened Jul 29, 2021
Split cluster based on raw amplitude view Open

area: visualization type: enhancement

Difficulty 4/5 3-5 days Newbie friendliness 20/100

cortex-lab/phy#1099 · 2 comments · Opened Jun 24, 2021
Co-Curing multiple sessions worth of data Open

area: data type: enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

cortex-lab/phy#1096 · 2 comments · Opened May 13, 2021
count the number of filtered clusters Open

area: gui type: enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

cortex-lab/phy#1093 · Opened Apr 18, 2021
TraceView feature request: center the cluster channels & auto-update Open

area: visualization type: enhancement

Difficulty 4/5 3-5 days Newbie friendliness 38/100

cortex-lab/phy#1092 · Opened Apr 17, 2021
Feature Request: Density toggle on waveform view Open

area: visualization type: enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

cortex-lab/phy#1090 · Opened Apr 8, 2021
Problem with WaveformView Open

area: visualization status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 30/100

cortex-lab/phy#1082 · 4 comments · Opened Feb 26, 2021
Incorrect channel selection in featureView (ctrl+click in waveformview) Open

area: data scope: legacy-kwik status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1080 · 2 comments · Opened Feb 22, 2021
segmentation fault, seemingly random on multiple datasetes Open

area: installation status: needs-info type: bug

Difficulty 5/5 Over a week Newbie friendliness 25/100

cortex-lab/phy#1078 · 4 comments · Opened Feb 22, 2021
Sort traceview by channel ID? Open

area: visualization type: enhancement

Difficulty 3/5 1-2 days Newbie friendliness 38/100

cortex-lab/phy#1076 · Opened Feb 17, 2021
Error when executing action next Open

area: performance status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cortex-lab/phy#1074 · 5 comments · Opened Feb 14, 2021
redefining PC space for feature view Open

area: data type: enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

cortex-lab/phy#1065 · Opened Jan 13, 2021
GUI resets to default view Open

area: gui status: needs-info type: bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

cortex-lab/phy#1061 · 1 comment · Opened Dec 14, 2020

cortex-lab/phy

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