SACGF/variantgrid

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VariantGrid public repo

Stars: 31
Forks: 3
Open beginner issues: 0
Indexed issues: 474
Avg merge: 10h 1m
Merged PRs (30d): 37

Dominant language: Python
License: No license data
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 16, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue

Open All

474 issues indexed so far

New Node Filter: Gene Annotation Regions filter (promoters etc) Open

Analysis

SACGF/variantgrid#3 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Custom VCF info/format fields Open

VCF

SACGF/variantgrid#41 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Global / Gene sample stats Open

SACGF/variantgrid#43 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Population data annotation - Genome Asia, Medical Genome Reference Bank, Iranome Open

Annotation

SACGF/variantgrid#48 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Increase doco on the phenotype matching Open

documentation Ontology

SACGF/variantgrid#1 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Redesign VG.com front page Open

SACGF/variantgrid#35 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Phenotype aliases / overrides in database Open

Ontology

SACGF/variantgrid#45 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Django impersonate Open

SACGF/variantgrid#44 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Samples that have a variant in the gene Open

Gene

SACGF/variantgrid#32 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Gene Lollypop graph / Hotspot graph v3 - suggestions and improvements Open

HotSpot graph

SACGF/variantgrid#42 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Display resolved p.HGVS in classification and variant tables Open

good first issue

SACGF/variantgrid#19 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Related data fixes/enhancements Open

SACGF/variantgrid#28 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Analysis templates - page and batch results Open

Analysis Templates

SACGF/variantgrid#7 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Analysis templates polish Open

Analysis Templates

SACGF/variantgrid#6 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
PopulationNode counts change over time, mismatch in grid/count Open

SACGF/variantgrid#26 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Refactor igv javascript code Open

Refactoring

SACGF/variantgrid#23 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Optimise VCF import Closed

VCF

SACGF/variantgrid#67 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Warn when variant ref doesn't match our reference fasta Open

Annotation Reference base Variant Details VEP

SACGF/variantgrid#68 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Sequencing data permissions Open

Sharing / Permissions

SACGF/variantgrid#91 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Share an object with a specific user or group (lab) Open

SACGF/variantgrid#99 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Summary table of ClinGen gene-specific guidelines. Open

enhancement

SACGF/variantgrid#115 · 1 comment · 0 reactions · 2 assignees · Indexed Sep 16, 2026
View variants as a track in IGV or UCSC Open

SACGF/variantgrid#117 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Nearby variants v2 Open

Variant Details

SACGF/variantgrid#118 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
ClinGen gene dosage information Open

Annotation enhancement

SACGF/variantgrid#129 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Analysis Node Edtors - tooltips on elements Open

Analysis documentation

SACGF/variantgrid#135 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Permissions of objects used inside analysis Open

Analysis Sharing / Permissions

SACGF/variantgrid#140 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Variant ranking / prioritisation / ACMG auto-classification Open

ACMG classification

SACGF/variantgrid#154 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Somalier v2 Open

Relatedness

SACGF/variantgrid#162 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Proposal to add new mode of inheritance to classification form Open

Evidence Key

SACGF/variantgrid#165 · 8 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Import/Export analyses via web Open

Analysis

SACGF/variantgrid#170 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Gene Symbol page - jumps to classifications Open

bug

SACGF/variantgrid#172 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Custom columns enhancements Open

enhancement

SACGF/variantgrid#174 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Proposal to add 'other variants in codon' field to classification form Open

enhancement Evidence Key SA Pathology

SACGF/variantgrid#182 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Somalier relateness investigation Open

Relatedness

SACGF/variantgrid#183 · 12 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Analysis template - working copy - warning and reset to last saved Open

Analysis Templates

SACGF/variantgrid#188 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
AnalysisNode common warnings framework Open

Analysis Refactoring

SACGF/variantgrid#189 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Somalier relateness checks Open

Relatedness

SACGF/variantgrid#196 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Automated allele linking Open

Liftover

SACGF/variantgrid#207 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Management of intergeneic/noncoding regions of interest Open

SACGF/variantgrid#209 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Minor Patient Record UI fixes Open

enhancement

SACGF/variantgrid#221 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Allow analysis start/stop and visualisation of analysis progress Open

Analysis enhancement

SACGF/variantgrid#222 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Node count abbreviations (ie 10k instead of 10024) Open

Analysis

SACGF/variantgrid#235 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
GeneList versions Open

SACGF/variantgrid#239 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Sample Gene List improvements Open

SACGF/variantgrid#256 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Analysis nodes - level of detail documentation Open

Analysis

SACGF/variantgrid#286 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
VG page - quick marketing / features etc Open

documentation

SACGF/variantgrid#290 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Analysis filters apply across all transcripts (rather than only representative) Open

Analysis Annotation

SACGF/variantgrid#297 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
AnalysisNode - cache counts + grid by input + hash of config Open

Analysis

SACGF/variantgrid#299 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Partition locus/variant/annotation tables by contig Open

optimisation

SACGF/variantgrid#300 · 9 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
AnalysisNode appearance - font awesome logos Open

Analysis

SACGF/variantgrid#311 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026

SACGF/variantgrid

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