SACGF / SACGF/variantgrid

Custom VCF info/format fields

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#41 4 comments 0 reactions 0 assignees View on GitHub
VCF
Dominant language
Python
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30
Forks
3
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9h 28m
Merged PRs (30d)
42

Description

At the moment we don't allow custom VCFs and just import the genotype fields and re-do the annotation.

VCF miner allows custom fields, but uses noSQL database - as you don't know the schema etc.

We could store these as JSON fields against the observed variant giving us the best of both worlds.

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