Project-MONAI/MONAILabel

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MONAI Label is an intelligent open source image labeling and learning tool.

Stars: 891
Forks: 269
Open beginner issues: 0
Indexed issues: 156
Avg merge: 15h 41m
Merged PRs (30d): 1

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 14, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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156 open issues indexed

Need a way to provide patient/ volume level annotations Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1446 · Opened May 23, 2023
Need a scoring method to compare inference of 2 models Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

Project-MONAI/MONAILabel#1445 · Opened May 23, 2023
Need new scoring method to count inferred labels Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

Project-MONAI/MONAILabel#1444 · 2 comments · Opened May 23, 2023
Allow the use of cpu when having GPUs Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/MONAILabel#1442 · Opened May 19, 2023
qMRMLSegmentEditorWidget has no attribute named 'setSourceVolumeNode' Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Project-MONAI/MONAILabel#1440 · 1 comment · Opened May 18, 2023
default server address slicer plugin Open

Difficulty 1/5 Under an hour Newbie friendliness 50/100

Project-MONAI/MONAILabel#1438 · 1 comment · 1 reaction · Opened May 18, 2023
Add option to run batch inference from slicer UI Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

Project-MONAI/MONAILabel#1437 · 2 comments · Opened May 17, 2023
Add ability to load different label to current image Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

Project-MONAI/MONAILabel#1436 · 1 comment · Opened May 16, 2023
OHIF Stack Image Sync Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1435 · 3 comments · Opened May 16, 2023
Upcoming OpenSlide release will change library filename Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/MONAILabel#1433 · 1 comment · 1 reaction · Opened May 13, 2023
Label Reviewer plugin Doesn't load labels Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1432 · Opened May 12, 2023
Adding near-real time collaborative manual segmentation Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1422 · 2 comments · Opened May 1, 2023
Expose a simple way to add training handlers Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1420 · Opened Apr 28, 2023
Possible enhancements of `monailabel/utils/others/generic.py` Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1408 · 5 comments · Opened Apr 19, 2023
DeepEdit click based refinement seems to be adding segmentation on wrong side Open

Project-MONAI/MONAILabel#1407 · 22 comments · 1 assignee · Opened Apr 17, 2023
Export torch script when training, Allow to import it for inference Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1402 · 3 comments · Opened Apr 11, 2023
Monai Label holds on to GPU memory when facing OOM error Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

Project-MONAI/MONAILabel#1397 · 1 comment · Opened Apr 10, 2023
Simplify adding static parameters and metric to MLFlow Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1383 · 3 comments · Opened Apr 8, 2023
Use BundleWorkflow for bundle related process | monaibundle app Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

Project-MONAI/MONAILabel#1352 · Opened Mar 22, 2023
torch.cuda.OutOfMemoryError & RuntimeError: applying transform Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1351 · 9 comments · 1 reaction · Opened Mar 22, 2023
Issues with heuristic_planner on a multiple GPU setup Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1349 · 4 comments · Opened Mar 21, 2023
XNAT integration with MONAI Label for training Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1342 · 1 comment · Opened Mar 17, 2023
Set up MONAILabel with XNAT for training Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1339 · Opened Mar 15, 2023
CUDA is not getting find by Monailabel Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1337 · 4 comments · Opened Mar 13, 2023
Cannot read properties of undefined (reading 'byteLength') Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1336 · 16 comments · Opened Mar 13, 2023
TypeError for creating model path when running batch inference with custom monai bundle Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1335 · Opened Mar 10, 2023
New model deepgrow_v2: with multi-head inference Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1328 · 2 comments · Opened Feb 24, 2023
Add Freeze option for deep grow Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1327 · 2 comments · Opened Feb 24, 2023
Reviewer label for OHIF and Xnat Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1301 · Opened Feb 13, 2023
Deepedit has low resolution and non responsive to new clicks Open

Project-MONAI/MONAILabel#1299 · 3 comments · 1 assignee · Opened Feb 13, 2023
Finetune new model by freezing all layers except FC Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

Project-MONAI/MONAILabel#1298 · 7 comments · Opened Feb 13, 2023
Create new datastore "localJson" to read from json file the location of images and labels Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

Project-MONAI/MONAILabel#1292 · Opened Feb 10, 2023
Plugin Quality (User Experience) for 3D Slicer, QuPath, OHIF Open

0.7.0

Project-MONAI/MONAILabel#1278 · 1 reaction · 2 assignees · Opened Feb 6, 2023
Restored transform doesn't restore orientation Open

0.7.0

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1266 · 9 comments · Opened Jan 27, 2023
unable to use inverse_transforms in infers Open

0.7.0

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/MONAILabel#1265 · Opened Jan 27, 2023
Evaluate options to minimize MONAILabel start on windows and ubuntu Open

0.7.0

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1263 · Opened Jan 24, 2023
Showcase OHIF + MONAILabel with user auth support Open

0.7.0

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1261 · 1 comment · Opened Jan 24, 2023
Pytorch, Ignite, Monai -> Monai Label Tutorial Open

backlog

Project-MONAI/MONAILabel#1195 · 2 reactions · 1 assignee · Opened Dec 9, 2022
0.5 threshold used in multi-label deepedit Open

backlog

Project-MONAI/MONAILabel#1181 · 2 comments · 1 assignee · Opened Dec 5, 2022
Decouple Image Signal and Guidance Signal Open

backlog

Project-MONAI/MONAILabel#1173 · 20 comments · 1 assignee · Opened Dec 4, 2022
RuntimeError when "brats_mri_segmentation_v0.2.1" from monaibundle is used. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1051 · 61 comments · 1 reaction · Opened Oct 7, 2022
Video Annotation with MONAI Label - CVAT support Open

backlog

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1002 · 2 comments · 2 reactions · Opened Sep 19, 2022
Develop/Integrate C++ Client library Open

backlog

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#910 · 2 comments · 1 reaction · Opened Aug 4, 2022
Evaulate C++ Client developed by PAIR Open

backlog

Difficulty 5/5 Over a week Newbie friendliness 15/100

Project-MONAI/MONAILabel#909 · 1 reaction · Opened Aug 4, 2022
Caching of volumes to GPU during training of deepedit (radiology app) Open

backlog

Project-MONAI/MONAILabel#874 · 2 comments · 2 assignees · Opened Jul 14, 2022
Add monitoring metrics based on prometheus Open

backlog

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#803 · 1 reaction · Opened May 24, 2022
Feature request: Support multiple annotations on the same image instance Open

backlog enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#787 · 17 comments · 6 reactions · Opened May 16, 2022
OHIF support for multi-label scribbles Open

backlog

Project-MONAI/MONAILabel#756 · 1 reaction · 1 assignee · Opened Apr 24, 2022
Use standard terminology to define content of a segment Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#724 · 3 reactions · Opened Apr 4, 2022
Out of source default saving Open

backlog enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#614 · 3 comments · Opened Feb 4, 2022

Project-MONAI/MONAILabel

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