Project-MONAI/MONAILabel

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MONAI Label is an intelligent open source image labeling and learning tool.

Stars: 891
Forks: 269
Open beginner issues: 0
Indexed issues: 156
Avg merge: 15h 41m
Merged PRs (30d): 1

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 14, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

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156 open issues indexed

Spacingd makes label and image shape mismatch Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1684 · 1 comment · Opened May 6, 2024
[1612302] [ThreadPoolExecutor-1_0] [INFO] (monailabel.utils.async_tasks.utils:83) - Return code: -9 Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1681 · 2 comments · Opened Apr 29, 2024
Failed to upload volume to Server. Message:: Status: 500; Response: Internal Server Error Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1663 · 4 comments · Opened Mar 28, 2024
Regarding Partial Annotation Storage and Retrieval in MONAI Label and 3D Slicer Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1662 · 1 comment · Opened Mar 28, 2024
Annotation with MONAI Label for multiple annotators Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1661 · 2 comments · Opened Mar 28, 2024
Probability map export from monailabel server Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1657 · 1 comment · Opened Mar 21, 2024
Error loading mask in MONAILabel Reviewer Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1656 · 1 comment · Opened Mar 20, 2024
Can I set different laber on different layers? Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1655 · 2 comments · Opened Mar 18, 2024
OHIF deepgrow model gives Nonetype foreground interactions Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1654 · 3 comments · Opened Mar 15, 2024
How to set each channel to operate independently Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1653 · 6 comments · Opened Mar 14, 2024
Only one channel is recognized out of 15 channels Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1652 · 3 comments · Opened Mar 10, 2024
Selective Inference Calling Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1651 · 1 comment · Opened Mar 8, 2024
MONAILabel Inference Label export to external PACS systems Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1650 · 1 comment · Opened Mar 8, 2024
MONAILabel Inference Requests for specific image IDs. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1649 · 2 comments · Opened Mar 8, 2024
Create a dragonfly plugin for MONAILabel Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1637 · 4 comments · 1 reaction · Opened Feb 21, 2024
Segment volume calculation and structured report for secondary capture images. Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1633 · Opened Feb 8, 2024
Segmentation masks disappears from 2d views after histogram thresholding Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1632 · 8 comments · 1 reaction · Opened Feb 7, 2024
Installation issue - pkgutil subprocess error Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1631 · 7 comments · Opened Feb 7, 2024
Secondary Capture Images and Send to XNAT Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1621 · 2 comments · Opened Jan 16, 2024
Monai whole body segmentation unable to run on gpu in colab Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1618 · 4 comments · Opened Jan 9, 2024
Can we upgrade the version of pydantic to allow ver >2.0? Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/MONAILabel#1616 · 1 comment · Opened Jan 3, 2024
The selected display sets could not be added to the viewport due to a mismatch in the Hanging Protocol rules. Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

Project-MONAI/MONAILabel#1612 · 1 comment · Opened Dec 23, 2023
Dropout and MC dropout for U-Net segmentation Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1606 · 1 comment · Opened Dec 6, 2023
3D Slicer MonaiReviewer plugin fails to connect Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Project-MONAI/MONAILabel#1599 · 1 comment · Opened Nov 24, 2023
How can I reorganize labeled data via the MONAILabel extension? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1597 · 7 comments · Opened Nov 24, 2023
Replacement for deprecated BasicInferTask.add_cache_transform Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1579 · 2 comments · Opened Oct 23, 2023
ImportError: cannot import name 'AddChanneld' from 'monai.transforms' Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1571 · 4 comments · 1 reaction · Opened Oct 14, 2023
OHIF V3 MONAI Plugin: Add shortcuts for manual sphere (size inc/dec, change to erase) Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1570 · Opened Oct 12, 2023
How to make a image file from monailabel inference? Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1568 · 1 comment · 1 reaction · Opened Oct 12, 2023
OHIF V3 MONAI Plugin: Some images stop loading Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1565 · 3 comments · Opened Oct 10, 2023
OHIF V3 MONAI Plugin: Study list give errors Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1564 · 1 comment · Opened Oct 10, 2023
OHIF V3 MONAI Plugin: cannot change label color Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1563 · 1 comment · Opened Oct 10, 2023
OHIF V3 MONAI Plugin: Click to select segments Open

enhancement OHIF

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1556 · 2 comments · Opened Oct 6, 2023
Use Multiple Bundle Config Files With Inference/Training Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1549 · 3 comments · Opened Sep 19, 2023
Update transforms that use `image_meta_dict` Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1544 · Opened Sep 6, 2023
Change of ROI size causes "Application startup failed" error Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/MONAILabel#1535 · Opened Aug 29, 2023
MultiGPU usage problem Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1507 · 5 comments · 1 reaction · Opened Jul 28, 2023
Pathology apps cannot read .ndpi file even if I've adjusted MONAILabel/sample-apps/pathology/main.py Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1502 · 2 comments · Opened Jul 26, 2023
MonaiLabel Segmentation Error Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1501 · 3 comments · Opened Jul 25, 2023
slicer3d monailabel extension unable to fetch image from the server Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1497 · 1 comment · 1 reaction · Opened Jul 25, 2023
Auto segmentation didn't show the pretrain model Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1496 · 3 comments · Opened Jul 24, 2023
3d Slicer with Keycloak auth not working Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1493 · 3 comments · Opened Jul 19, 2023
More documentation on using local (non-zoo) bundles with MONAILabel Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1490 · 3 comments · Opened Jul 14, 2023
Monai label server add API to return number of requests in the queue Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1487 · 1 comment · Opened Jul 10, 2023
3D Slicer fetching wrong sample due to local cache Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1484 · 1 comment · 1 reaction · Opened Jul 6, 2023
Use existing segmentation as segmentNode Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/MONAILabel#1477 · 2 comments · 1 reaction · Opened Jun 21, 2023
Monailabel is ignoring arguments (issue with PYTHONPATH?) Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1469 · 13 comments · Opened Jun 11, 2023
[Slicer] Hide button for control points in the SmartEdit/DeepGrow section Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1463 · 6 comments · Opened Jun 8, 2023
Import multiple labels Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

Project-MONAI/MONAILabel#1459 · 6 comments · Opened Jun 2, 2023
MONAI Label extension in Qupath (pathology app startup failed) Open

Difficulty 4/5 3-5 days Newbie friendliness 15/100

Project-MONAI/MONAILabel#1457 · 7 comments · Opened Jun 2, 2023

Project-MONAI/MONAILabel

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