Project-MONAI / Project-MONAI/MONAILabel

Replacement for deprecated BasicInferTask.add_cache_transform

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Dominant language
Python
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Forks
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Avg merge
15h 41m
Merged PRs (30d)
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Description

On the latest dev branch and with MONAI 1.3.0, add_cache_transform now prints a warning and does nothing. As far as I can see other models, e.g. DeepEdit, have dropped support for it completely.
Is there any replacement for it? Is was rather nice for interactive segmentation, for me it saved ~2 seconds per iteration.

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First steps

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  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start at the BasicInferTask.add_cache_transform entry point and compare its current behavior with the DeepEdit support mentioned in the issue. A complete resolution would identify a supported replacement, if one exists, and explain how interactive segmentation can retain the reported per-iteration benefit.

Written by the indexing model from the issue text.

Assessment

Tech stack
python, pytorch
Domain
machine-learning
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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