Project-MONAI/MONAILabel

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MONAI Label is an intelligent open source image labeling and learning tool.

Stars: 891
Forks: 269
Open beginner issues: 0
Indexed issues: 156
Avg merge: 15h 41m
Merged PRs (30d): 1

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 14, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

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156 open issues indexed

[HAI] Challenge scoping for outreach (see #1905) Open

Human-AI Interaction

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1906 · Opened Jul 27, 2026
[HAI] General call for outreach ideas Open

Human-AI Interaction

Difficulty 5/5 Over a week Newbie friendliness 30/100

Project-MONAI/MONAILabel#1905 · Opened Jul 27, 2026
[HAI] Persistent vs Sample Level Manifest protocol Open

Human-AI Interaction

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1904 · Opened May 27, 2026
[HAI] Wire protocol / API payload schema for label semantics Open

Human-AI Interaction

Difficulty 5/5 Over a week Newbie friendliness 35/100

Project-MONAI/MONAILabel#1903 · 5 comments · Opened May 13, 2026
Option to turn-off SAM model loading Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

Project-MONAI/MONAILabel#1898 · 1 comment · Opened Mar 11, 2026
Independent MONAILabel Reviewer option without model/app requirements Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

Project-MONAI/MONAILabel#1897 · Opened Mar 11, 2026
MONAI bundle SwinUNETR failing with TypeError Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1894 · Opened Feb 26, 2026
[HAI] Label Reviewer data loader fails for multiple label sets or subsequent review sessions Open

Human-AI Interaction

Project-MONAI/MONAILabel#1891 · 1 reaction · 1 assignee · Opened Feb 7, 2026
Fix all the build issues, test and verify all basic features and release a new version for monailabel Open

Project-MONAI/MONAILabel#1882 · 2 comments · 2 reactions · 1 assignee · Opened Dec 24, 2025
Establish clear communication processes on upcoming architectural changes/functionality updates (deprecation, etc). Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

Project-MONAI/MONAILabel#1873 · Opened Oct 29, 2025
Clarify the process how we want to work/prioritize with the issues Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1872 · Opened Oct 29, 2025
[HAI] Prevention of inconsistent label specifications Open

Human-AI Interaction

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1871 · 1 comment · Opened Oct 29, 2025
Consistent label specification in App interface Open

Human-AI Interaction

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1870 · Opened Oct 29, 2025
Clarify and standardize the model type and interaction scheme taxonomy Open

Human-AI Interaction

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1869 · Opened Oct 29, 2025
Provide a well defined terminlogy to encode label meaning semantically Open

Human-AI Interaction

Difficulty 5/5 Over a week Newbie friendliness 35/100

Project-MONAI/MONAILabel#1868 · 23 comments · Opened Oct 29, 2025
Revisit/Evolve the MONAI Label API based on the consensus Open

Human-AI Interaction

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1867 · Opened Oct 29, 2025
cannot visit the web site! Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1865 · 1 comment · Opened Oct 23, 2025
Issues with multiple labels and masks overlapping in Monailabel Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1856 · 3 comments · Opened Sep 2, 2025
monailabel with MONAI 1.5.0 does not recognize pytorch 2.7.1 with gpu in Windows Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1844 · Opened Jul 8, 2025
ModuleNotFoundError: No module named 'pydicom._storage_sopclass_uids' Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1841 · 3 comments · 2 reactions · Opened Jun 22, 2025
Monailabel-Plugin in XNAT OHIF Viewer status code 500 Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1837 · Opened Jun 17, 2025
OHIF Plugin Filters Not Working Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

Project-MONAI/MONAILabel#1835 · Opened Jun 5, 2025
Unable to view segmentation and SmartEdit option in the latest version 0.8.5 in OHIF version 3.10.0-beta.5 Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1834 · 1 comment · Opened May 21, 2025
Upload cache session based isolation Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1829 · Opened Apr 14, 2025
Integration Help: Integrating MONAI Label Plugin into OHIF + Orthanc + Keycloak Docker Setup Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1826 · 1 comment · Opened Apr 4, 2025
OHIF V3 version is unable to remove automatically segmented segments Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1822 · Opened Mar 27, 2025
Unable to Train DeepEdit-DynUNet from Scratch on BraTS-2018 Dataset Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1819 · Opened Mar 12, 2025
automatically trigger inference once a new study is receiver by xnat. Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1813 · 1 comment · Opened Feb 10, 2025
sample-apps/vista2d installation instructions incomplete Open

Difficulty 2/5 1-3 hours Newbie friendliness 38/100

Project-MONAI/MONAILabel#1810 · Opened Jan 30, 2025
Option to save DICOM SEG in OHIF is missing Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1805 · 4 comments · 2 reactions · Opened Jan 10, 2025
QuPath Unsupported File Type Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1799 · 9 comments · Opened Dec 16, 2024
Monailabel cann't run correctly in windows 11 Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

Project-MONAI/MONAILabel#1794 · 6 comments · Opened Dec 10, 2024
vertebra_pipeline errors Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1770 · 8 comments · Opened Oct 30, 2024
Fundamental/possible "error"/feature Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1752 · 2 comments · Opened Oct 13, 2024
Dicom seg shows all labels as color red Open

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

Project-MONAI/MONAILabel#1751 · 2 comments · Opened Oct 11, 2024
Enable dependabot automatic fixing of dependencies for improved security Open

Difficulty 1/5 Under an hour Newbie friendliness 35/100

Project-MONAI/MONAILabel#1749 · 4 comments · Opened Oct 10, 2024
OAuth2 Authorization Code Grant with PKCE Flow auth.py Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1742 · 2 comments · Opened Sep 8, 2024
Run monai-label in kubernetes Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1728 · 3 comments · Opened Jul 30, 2024
Guide monai label to look into xnat folders and get the images Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/MONAILabel#1725 · Opened Jul 24, 2024
TestFindContoursd mismatch result when opencv installed Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/MONAILabel#1720 · 2 comments · Opened Jul 12, 2024
MONAI Label fails to Run Segmentation Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/MONAILabel#1711 · 2 comments · 1 reaction · Opened Jun 17, 2024
Unable to update cvat model: Missing path "/opt/conda" inside Nuclio container Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

Project-MONAI/MONAILabel#1708 · Opened Jun 13, 2024
MONAI Label Pathology Tutorial (monailabel_HelloWorld_radiology_3dslicer) Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/MONAILabel#1704 · Opened Jun 12, 2024
MONAI Label Endoscopy Tutorial (monailabel_endoscopy_cvat_tooltracking) Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/MONAILabel#1703 · Opened Jun 12, 2024
Support parallel annotations of multiple sequences Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/MONAILabel#1700 · 4 comments · 1 reaction · Opened Jun 7, 2024
Unable to connect to gider Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1698 · 6 comments · 1 reaction · Opened Jun 5, 2024
Integration of Monailabel and Girder Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1697 · 3 comments · 1 reaction · Opened Jun 5, 2024
Monai Label for QuPath not compatible with QuPath 0.5.x Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/MONAILabel#1694 · 9 comments · Opened May 27, 2024
Github access rate limit reached, please provide personal auth token by setting env MONAI_ZOO_AUTH_TOKEN or --conf auth_token <personal auth token> Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Project-MONAI/MONAILabel#1687 · 6 comments · Opened May 8, 2024
Version incompatible issue Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Project-MONAI/MONAILabel#1685 · Opened May 7, 2024

Project-MONAI/MONAILabel

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