Project-MONAI / Project-MONAI/MONAILabel
Option to save DICOM SEG in OHIF is missing
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- Dominant language
- Python
- Stars
- 891
- Forks
- 269
- Avg merge
- 15h 41m
- Merged PRs (30d)
- 1
Description
Describe the bug
Evaluating the use of OHIF instead of 3D slicer for a project. The segmentation is returned fine as a DICOM-SEG, but not able to see the save label option under the Active Learning tab.
To Reproduce
- Running latest monailabel docker image.
- Model is in monaibundle format and works perfectly fine with 3D slicer.
- Command Used: monailabel start_server --app apps/monaibundle --studies http://HOSTIP:8042/dicom-web --conf models tcv_heartlung_ct_bundle
Expected behavior
Ability to save DICOM-SEG under the Active-Learning Tab. Only Next Sample and Update Model options are seen.
Screenshots
Environment
Docker and Windows with Nvidia GPU.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Reproduce the issue with the provided monailabel start_server command, the monaibundle application, and the tcv_heartlung_ct_bundle model. Start from the OHIF Active Learning tab and compare its available actions with the DICOM-SEG returned by the server and the behavior in 3D Slicer. Done means the tab provides a working option to save the segmentation as DICOM-SEG.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- backend, machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100