Project-MONAI / Project-MONAI/MONAILabel
Integration of Monailabel and Girder
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- Dominant language
- Python
- Stars
- 891
- Forks
- 269
- Avg merge
- 15h 41m
- Merged PRs (30d)
- 1
Description
Hello, I would like to integrate Monailabel with Girder as the data source, and both Monailabel and Girder will be launched using Docker
The problem I encountered:
I used the official image of Monailabel, version: projectmonai/Monailabel: 0.8.0
After entering the container, I used the command to start monai: monailabel start_server -- app/usr/local/monailabel/sample apps/radiology -- studies http://girder_username:girder_password @Girder_ip: girder_port/api/v1-- conf models deepedit -- conf datasets. dataset1. source girder -- conf girder.api_token<api_key I created from the girder web page>
But when I access this address: http://monai_ip:8000/ohif/ , will jump here: http://monai_ip:8000/ohif/notfoundserver Unable to access my data in Girder
I'm not sure where the problem is, but I can be certain that the Docker port and IP address are not the problem, and I started it in the same way (different startup commands: monailabel start_server -- app/usr/local/monailabel/sample apps/radiology -- studies) http://username:password @Orthanc_ip: Orthanc_ port/dicom web -- conf models deepedit
)Can connect to Orthanc to access its data
Please help me, thank you
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the Docker setup with the reported MONAI Label 0.8.0 command, the Girder studies URL, and the API token, then inspect the /ohif/notfoundserver response. Compare it with the working Orthanc startup command; done means the OHIF endpoint can access the data served by Girder.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- docker, python
- Domain
- backend, devops
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100