Project-MONAI / Project-MONAI/MONAILabel
Pathology apps cannot read .ndpi file even if I've adjusted MONAILabel/sample-apps/pathology/main.py
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- Dominant language
- Python
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Description
I've added .ndpi on the line 190 ( settings.MONAI_LABEL_DATASTORE_FILE_EXT = [".ndpi", ".svs", ".png", ".npy", "*.tif", ".xml"] ) in the MONAILabel/sample-apps/pathology/main.py.
However. When I start MONAI Label Server to launch pathology app, the ndpi files have still not been read by the app as the picture below.
How should I do to adjust the pathology app to make it read .ndpi files ?
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Research direction
Start with MONAILabel/sample-apps/pathology/main.py around line 190, then launch the pathology app with an .ndpi file to trace where datastore file extensions are applied. Compare the configured extension list with the app's observed file-reading behavior; done means .ndpi files are discovered and loaded by the pathology app.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100