Project-MONAI / Project-MONAI/MONAILabel
MonaiLabel Segmentation Error
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- Dominant language
- Python
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Description
I am trying to train a new dataset (8 bit with 14 channels) within slicer via the MonaiLabel extension. I have adjusted the segmentation config to contain the correct parameters.
All the images and labels are loading fine. Not sure what other information is needed - any questions please leave a comment and I'll reply ASAP
This is the metadata from the images
NRRD0005
This NRRD file was generated by pynrrd
on 2023-07-04 00:07:44(GMT).
Complete NRRD file format specification at:
http://teem.sourceforge.net/nrrd/format.html
type: uint8
dimension: 3
sizes: 225 285 400
encoding: gzip
Here is the error:
weird_err_msg_monai.txt
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the segmentation configuration and the attached weird_err_msg_monai.txt, then compare the reported 14-channel uint8 NRRD metadata with the training requirements. Done means identifying the failing validation or loading step and documenting a reproducible fix or the additional information needed.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100