Project-MONAI / Project-MONAI/MONAILabel

Out of source default saving

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#614 3 comments 0 reactions 0 assignees View on GitHub

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backlog enhancement
Dominant language
Python
Stars
891
Forks
269
Avg merge
15h 41m
Merged PRs (30d)
1

Description

Apologies for all of the different issues.

I would love to see the default save locations be outside of both the --studies and --app folders. If I use the same app for two different runs (with different data, for example), then using the default parameters, they will overwrite each other (each will save the train_stats.json in the same location).

I feel it would be cleaner if the user were obliged to supply an --output argument and store all input in there. This would keep both the input data and app folders clean, allowing multiple runs with minimal changes. This would also solve this problem: https://github.com/Project-MONAI/MONAILabel/pull/610.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by tracing how the default paths under --studies and --app are selected and where train_stats.json is written; the issue does not name specific files or entry points. Review the behavior discussed in pull request 610, then determine the affected run paths and make --output the location for all generated input and output data without overwriting separate runs.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli, machine-learning
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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