Project-MONAI / Project-MONAI/MONAILabel
Label Reviewer plugin Doesn't load labels
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- Dominant language
- Python
- Stars
- 891
- Forks
- 269
- Avg merge
- 15h 41m
- Merged PRs (30d)
- 1
Description
Describe the bug
I want to load images and go through the labels, either the final labels or the original labels infered by my model.
loading up the reviewer app I can go through the images. However it doesn't seem to load the labels although the combobox (version of labels) displays all list correctly
Server logs
Nothing relevant there
[MainThread:INFO] (lib.datastore.local:502) - Adding Label: images_s0157 => version_102 => /tmp/tmp3bwqmfec.nrrd
[MainThread:INFO] (lib.datastore.local:506) - Adding Label: images_s0157 => version_102 => /tmp/tmp3bwqmfec.nrrd dest at /data/Challenges/totalsegmentator/monailabel/labels/version_102/images_s0157.nrrd
[MainThread:INFO] (lib.datastore.local:530) - Label Info: {'segmentationMeta': {'status': 'not segmented', 'approvedBy': '', 'level': '', 'comment': '', 'editTime': 1683911717}, 'ts': 1683911717, 'checksum': 'SHA256:de4c7060f9fb6caff4707ae072ecda0eacd8e4044a57865ba9f3473196a44385', 'name': 'images_s0157.nrrd'}
[MainThread:INFO] (monailabel.interfaces.app:496) - New label saved for: images_s0157 => images_s0157
To Reproduce
Steps to reproduce the behavior:
- open monai label reviewer after starting monai label
- connect to the server
- after image loads change the selected label
Expected behavior
I expect to see the label after the images are loaded, it should also reload on changing the name from the drop down list of labels
Screenshots
Additional context
I am running:
- latest slicer 5.3.0-4-27
- monai label 0.6
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the problem in the MONAI Label Reviewer app with the listed Slicer and MONAI Label versions: connect to the server, load an image, and change the label version in the dropdown. Trace how the selected label is requested and displayed; done means the chosen label appears after initial loading and reloads when the dropdown selection changes.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- desktop
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100