Project-MONAI / Project-MONAI/MONAILabel

Label Reviewer plugin Doesn't load labels

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Dominant language
Python
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Forks
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Avg merge
15h 41m
Merged PRs (30d)
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Description

Describe the bug
I want to load images and go through the labels, either the final labels or the original labels infered by my model.
loading up the reviewer app I can go through the images. However it doesn't seem to load the labels although the combobox (version of labels) displays all list correctly

Server logs
Nothing relevant there

[MainThread:INFO] (lib.datastore.local:502) - Adding Label: images_s0157 => version_102 => /tmp/tmp3bwqmfec.nrrd
[MainThread:INFO] (lib.datastore.local:506) - Adding Label: images_s0157 => version_102 => /tmp/tmp3bwqmfec.nrrd  dest at /data/Challenges/totalsegmentator/monailabel/labels/version_102/images_s0157.nrrd
[MainThread:INFO] (lib.datastore.local:530) - Label Info: {'segmentationMeta': {'status': 'not segmented', 'approvedBy': '', 'level': '', 'comment': '', 'editTime': 1683911717}, 'ts': 1683911717, 'checksum': 'SHA256:de4c7060f9fb6caff4707ae072ecda0eacd8e4044a57865ba9f3473196a44385', 'name': 'images_s0157.nrrd'}
[MainThread:INFO] (monailabel.interfaces.app:496) - New label saved for: images_s0157 => images_s0157

To Reproduce
Steps to reproduce the behavior:

  1. open monai label reviewer after starting monai label
  2. connect to the server
  3. after image loads change the selected label

Expected behavior
I expect to see the label after the images are loaded, it should also reload on changing the name from the drop down list of labels

Screenshots
image

Additional context
I am running:

  • latest slicer 5.3.0-4-27
  • monai label 0.6

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reproducing the problem in the MONAI Label Reviewer app with the listed Slicer and MONAI Label versions: connect to the server, load an image, and change the label version in the dropdown. Trace how the selected label is requested and displayed; done means the chosen label appears after initial loading and reloads when the dropdown selection changes.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
desktop
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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