Project-MONAI / Project-MONAI/MONAILabel
Need a way to provide patient/ volume level annotations
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- Dominant language
- Python
- Stars
- 891
- Forks
- 269
- Avg merge
- 15h 41m
- Merged PRs (30d)
- 1
Description
Describe the solution you'd like
In addition to segmentation we can do using slicer, I would like to provide volume level annotations as sex, disease severity, tumor location, disease location, etc. This would be the result of a classification models. it could also be helpful while selecting the data to train, as we can add annotations as difficulty,
Describe alternatives you've considered
I have tried to reuse the drop down menu of scoring in slicer since it is not used ( no way to trigger scoring from slicer). This needs code changes on the slicer code as:
1- After pressing submit label to do another call to update label info --> calling the datastore method
2 - To retrieve values when we do inference after pressing "next sample"
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing the Slicer scoring dropdown, the datastore method, and the inference flow after selecting “next sample.” Determine how volume-level annotations would be stored, updated after submission, and retrieved for training-data selection; done means the requested annotations persist and are available during inference.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- machine-learning
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100