Project-MONAI / Project-MONAI/MONAILabel

Need a way to provide patient/ volume level annotations

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Dominant language
Python
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891
Forks
269
Avg merge
15h 41m
Merged PRs (30d)
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Description

Describe the solution you'd like
In addition to segmentation we can do using slicer, I would like to provide volume level annotations as sex, disease severity, tumor location, disease location, etc. This would be the result of a classification models. it could also be helpful while selecting the data to train, as we can add annotations as difficulty,

Describe alternatives you've considered
I have tried to reuse the drop down menu of scoring in slicer since it is not used ( no way to trigger scoring from slicer). This needs code changes on the slicer code as:
1- After pressing submit label to do another call to update label info --> calling the datastore method
2 - To retrieve values when we do inference after pressing "next sample"

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Research direction

Start by tracing the Slicer scoring dropdown, the datastore method, and the inference flow after selecting “next sample.” Determine how volume-level annotations would be stored, updated after submission, and retrieved for training-data selection; done means the requested annotations persist and are available during inference.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
machine-learning
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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