Merck/deepbgc

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BGC Detection and Classification Using Deep Learning

Stars: 161
Forks: 29
Open beginner issues: 0
Indexed issues: 34

Dominant language: Jupyter Notebook
License: MIT
Last GitHub push: Nov 11, 2023
Latest indexed: Sep 19, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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34 open issues indexed

Installing DeepBGC for pipeline integration Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Merck/deepbgc#104 · Opened Oct 3, 2025
why not plant? Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

Merck/deepbgc#102 · Opened Jun 28, 2025
[Question] How can I use precomputed genes via GFF format with DeepBGC? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Merck/deepbgc#101 · Opened Oct 1, 2024
DeepBGC failed with ValueError: Grouper for 'sequence_id' not 1-dimensional Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Merck/deepbgc#100 · Opened Jul 29, 2024
installing deepbgc Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Merck/deepbgc#99 · 1 comment · Opened Jun 24, 2024
ValueError: End location (8780) must be greater than or equal to start location (9428) Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Merck/deepbgc#98 · Opened Mar 20, 2024
deepbgc info crash - same as Issue #39 Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Merck/deepbgc#97 · Opened Feb 20, 2024
User Warning Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Merck/deepbgc#96 · Opened Feb 8, 2024
Looking for individual genes Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

Merck/deepbgc#94 · Opened Nov 17, 2023
running "deepbgc info" issue Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Merck/deepbgc#91 · 1 reaction · Opened Jun 9, 2023
Bugs for protein input Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Merck/deepbgc#90 · 1 comment · Opened May 10, 2023
Hmmer and Prodigal Package Access Problem Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Merck/deepbgc#89 · 1 comment · Opened Apr 24, 2023
Could deepBGC be used for special gene clusters? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Merck/deepbgc#88 · Opened Apr 20, 2023
what "inhibitor" means??? Open

Difficulty 2/5 1-3 hours Newbie friendliness 20/100

Merck/deepbgc#87 · Opened Feb 21, 2023
fit_generator Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Merck/deepbgc#86 · Opened Feb 13, 2023
how to create negative samples? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Merck/deepbgc#85 · 1 comment · Opened Dec 8, 2022
how to get a cluster? Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

Merck/deepbgc#83 · Opened Oct 18, 2022
WARNING: Tensor flow backened message when running deepbgc info into the CLI Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Merck/deepbgc#82 · 1 comment · Opened Oct 4, 2022
Visualization Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

Merck/deepbgc#80 · 1 comment · Opened Sep 20, 2022
bug in get_proteins_by_id affecting pfam annotator Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Merck/deepbgc#78 · 4 comments · Opened Sep 6, 2022
Error during detector training Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Merck/deepbgc#73 · 5 comments · Opened May 15, 2022
How to get antismash and deebgc cobined svg? Open

Difficulty 1/5 Under an hour Newbie friendliness 20/100

Merck/deepbgc#72 · Opened May 12, 2022
I am getting an issue regarding memory, how to solve this ? Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Merck/deepbgc#71 · Opened Mar 20, 2022
DeepBGC failed with ValueError: missing molecule_type in annotations Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Merck/deepbgc#67 · 4 comments · Opened Feb 11, 2022
deepbgc pipeline does not seem to use more than 2 cores? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Merck/deepbgc#65 · 2 comments · Opened Jan 19, 2022
Deepbgc installation through conda Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Merck/deepbgc#61 · 5 comments · Opened Sep 23, 2021
Automatically re-annotate PFAM domains if they are incompatible Open

bug

Difficulty 5/5 Over a week Newbie friendliness 20/100

Merck/deepbgc#58 · 3 comments · Opened Jul 6, 2021
Installing deepBGC Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Merck/deepbgc#56 · 8 comments · Opened May 17, 2021
Installing 0.1.26 with Anaconda Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Merck/deepbgc#54 · 2 comments · Opened Apr 10, 2021
Problem for training DeepBGC from scratch Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Merck/deepbgc#46 · 6 comments · Opened Feb 26, 2021
using deepBGC with metagenomes Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Merck/deepbgc#43 · 9 comments · Opened Nov 26, 2020
Retrain on MIBiG 2.0 Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

Merck/deepbgc#37 · 11 comments · Opened May 5, 2020
Provide alternative versions of DeepBGC model Open

enhancement

Merck/deepbgc#9 · 1 assignee · Opened Mar 24, 2019
antiSMASH-compatible JSON output Open

enhancement

Merck/deepbgc#8 · 1 assignee · Opened Mar 24, 2019

Merck/deepbgc

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