ValueError: End location (8780) must be greater than or equal to start location (9428)

Hi,

I'm running version 0.1.31 and I'm getting the ValueError

part of error message is below:

Processing record #221974: k141_5772
Updating record molecule type to DNA
Finding genes in record: k141_5772
Reusing already existing HMMER hmmscan result: 111X30.10/tmp/k141_5772.pfam.domtbl.txt
End location (8780) must be greater than or equal to start location (9428)
Traceback (most recent call last):
File "/lustre/home/2101111992/miniconda3/envs/deepbgc/lib/python3.7/site-packages/deepbgc/main.py", line 113, in main
run(argv)
File "/lustre/home/2101111992/miniconda3/envs/deepbgc/lib/python3.7/site-packages/deepbgc/main.py", line 102, in run
args.func.run(**args_dict)
File "/lustre/home/2101111992/miniconda3/envs/deepbgc/lib/python3.7/site-packages/deepbgc/command/pipeline.py", line 177, in run
step.run(record)
File "/lustre/home/2101111992/miniconda3/envs/deepbgc/lib/python3.7/site-packages/deepbgc/pipeline/annotator.py", line 35, in run
pfam_annotator.annotate()
File "/lustre/home/2101111992/miniconda3/envs/deepbgc/lib/python3.7/site-packages/deepbgc/pipeline/pfam.py", line 122, in annotate
location = self._get_pfam_loc(best_hsp.query_start, best_hsp.query_end, protein)
File "/lustre/home/2101111992/miniconda3/envs/deepbgc/lib/python3.7/site-packages/deepbgc/pipeline/pfam.py", line 55, in _get_pfam_loc
return FeatureLocation(start, end, strand=feature.strand)
File "/lustre/home/2101111992/miniconda3/envs/deepbgc/lib/python3.7/site-packages/Bio/SeqFeature.py", line 800, in init
f"End location ({self.end}) must be greater than "
ValueError: End location (8780) must be greater than or equal to start location (9428)

DeepBGC failed with ValueError: End location (8780) must be greater than or equal to start location (9428)
k141_5772.pfam.domtbl.txt
k141_5772.pfam.proteins.txt
k141_5772.prodigal.nucl.txt
k141_5772.prodigal.proteins.txt
Thank you for your help!

Start in deepbgc/pipeline/pfam.py, especially _get_pfam_loc, using the traceback and the attached HMMER and Prodigal output files as inputs. Reproduce the failure with the k141_5772 data and trace how the reported query coordinates reach FeatureLocation. Done means the failing input is handled without the ValueError and the pipeline completes annotation for this case.