Bugs for protein input
Open
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 161
- Forks
- 29
- PR merge metrics
- No merged PRs in 30d
Description
@prihoda Hi! I may find a bug that:
The output file (*.bgc.tsv) does not have "protein_ids bio_pfam_ids pfam_ids" (empyt), no matter use protein file (--protein ) or change the protein file into gbk file (deepbgc prepare).
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Reproduce the issue using the --protein input and the GBK file produced by deepbgc prepare, then inspect the generated .bgc.tsv output. Done means the protein_ids, bio_pfam_ids, and pfam_ids fields are populated when valid protein input is supplied.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100